| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,900,704:1 | +T | 7.8% | coding (1255/4026 nt) | PP_1703 → | assimilatory nitrate reductase/sulfite reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,900,704 | 1 | . | T | 7.8% | 297.8 / 19.9 | 77 | coding (1255/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| Reads supporting (aligned to +/- strand): ref base . (33/38); new base T (4/2); total (37/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.50e-01 | |||||||||||
CCACCCGGCAGCCTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGC > NC_002947/1900560‑1900848 | ccACCCGGCAGCCTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑Tgcg > 2:356311/1‑149 (MQ=255) aCCCGGCAGCCTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCa < 1:94528/149‑1 (MQ=255) cGGCAGCCTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAgg < 8:224594/149‑1 (MQ=255) cTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCCTTGCGC‑AGGCCgt > 6:332076/1‑145 (MQ=255) cTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCCTTGCGC‑AGGCCgt < 5:332076/146‑2 (MQ=255) cgcAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCCTTGCGC‑AGGCCgtcgat < 6:216377/147‑6 (MQ=255) gcAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTc < 4:164938/149‑1 (MQ=255) cAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCa < 7:390163/149‑1 (MQ=255) aGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGTAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTAcc < 1:356311/149‑1 (MQ=255) ggggggCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTAccc < 4:348965/149‑1 (MQ=255) ggggggCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTAcc > 2:88666/1‑148 (MQ=255) ggggCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAATCCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCa < 1:107427/149‑1 (MQ=255) gCGAGGGTACGGTGTCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGAc > 6:11940/1‑149 (MQ=255) gCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGAc < 3:36806/149‑1 (MQ=255) cGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACg > 6:4288/1‑149 (MQ=255) gTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTc > 2:255670/1‑149 (MQ=255) tACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTcc > 2:57897/1‑149 (MQ=255) cGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCt < 2:20609/148‑1 (MQ=255) cGGGGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCt < 8:107825/148‑1 (MQ=255) gTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGa < 5:8877/149‑1 (MQ=255) tGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGac < 4:297414/149‑1 (MQ=255) tGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCATCCTCGac < 5:4288/149‑1 (MQ=255) gcgcTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGaca < 7:294300/148‑1 (MQ=255) gcgcTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGaca < 8:347100/148‑1 (MQ=255) cgcTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCATGACGCCTTCCTCGACAcc < 6:360242/149‑1 (MQ=255) cgcTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCACCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACAcc < 2:336973/149‑1 (MQ=255) gcTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACAcc > 6:352100/1‑148 (MQ=255) ttCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGACAGGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGaaa < 1:119450/149‑1 (MQ=255) gggCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAaaccaa > 8:370517/1‑149 (MQ=255) gggCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAaaccaa > 5:143859/1‑149 (MQ=255) gCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGaca < 6:408169/137‑1 (MQ=255) gCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGaca > 5:408169/1‑137 (MQ=255) gATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGtt < 5:114483/149‑1 (MQ=255) aaaGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGc > 6:272853/1‑149 (MQ=255) aaGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGcc > 5:67299/1‑149 (MQ=255) cGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACa > 5:109452/1‑149 (MQ=255) gtgaagtgaaAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑CGAC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTAAACCCGACaa > 8:156105/1‑147 (MQ=255) gtgaagtgaaAGCCTGCTGGGTCATCTGAAGCAACCCGTTGTCCAGTTTCGCCAA‑CCGTCAGCAAGTGATCTAC‑GGCC‑TTCGCAAGGCCGAACTGGTCATTACCCAGTACGGCTTCCTCGACACCGAAACCAACCGTTACGCCGACAt < 7:156105/148‑1 (MQ=255) aagtgaaAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCctg > 2:177049/1‑149 (MQ=255) tgaaAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAACCGACCCGGTACGCCGCCATCctgctg > 6:258907/1‑149 (MQ=255) tgaaAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCctgctg < 6:143859/149‑1 (MQ=255) tCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTgg > 2:376784/1‑149 (MQ=255) tCTGCAGCAACCCGGTGGCCAGTGTCGCTAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACAGTTACGCCGa > 2:30965/1‑121 (MQ=255) tCTGCAGCAACCCGGTGGCCAGTGTCGCTAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACAGTTACGCCGa < 1:30965/121‑1 (MQ=255) cagcaACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGaa < 5:272853/148‑1 (MQ=255) agcaACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAgg < 7:59461/149‑1 (MQ=255) caACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGc > 5:101167/1‑148 (MQ=255) aaCCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGa < 1:177049/149‑1 (MQ=255) cccGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAgg < 3:189757/149‑1 (MQ=255) cGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGgt > 6:301696/1‑149 (MQ=255) tGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGtgtg < 1:255670/149‑1 (MQ=255) gCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGtgat < 1:88666/149‑1 (MQ=255) cAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGtgatga > 2:134149/1‑149 (MQ=255) cAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGtgat < 7:40159/147‑1 (MQ=255) cAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGtgat > 8:40159/1‑147 (MQ=255) aGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTgatgat < 5:301696/149‑1 (MQ=255) aGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTgatgat < 5:11940/149‑1 (MQ=255) tgtCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATc > 7:74334/1‑148 (MQ=255) cGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCaa > 7:213354/1‑147 (MQ=255) cAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACagc > 5:48192/1‑148 (MQ=255) aa‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACagc > 4:294795/1‑147 (MQ=255) cGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACagcgagcg > 7:360561/1‑149 (MQ=255) gTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACagcgagcg > 8:294603/1‑148 (MQ=255) cAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCt < 6:109452/149‑1 (MQ=255) aGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACa > 1:235787/1‑134 (MQ=255) aGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACa < 2:235787/134‑1 (MQ=255) aGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGa < 7:294603/149‑1 (MQ=255) gTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGAc < 5:352100/149‑1 (MQ=255) tGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGAcc < 6:101167/149‑1 (MQ=255) tGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGAcc < 1:57897/149‑1 (MQ=255) accagttc‑GGCCTTGCGC‑AGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGAcc > 7:126809/8‑149 (MQ=255) cGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGCGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCACCCTGAACCt > 4:415611/1‑147 (MQ=255) ttc‑GGCCTTGCGC‑AGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGAt > 7:11740/3‑149 (MQ=255) gAC‑GGCC‑TGCGAAAGGCCGAACTGTTCATTACCCAGGCCGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACCTCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGAt > 3:119640/1‑149 (MQ=255) aC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATg > 8:212926/1‑149 (MQ=255) aC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATg > 8:249798/1‑149 (MQ=255) c‑GGCCTTGCGC‑AGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGc > 8:156316/1‑149 (MQ=255) cc‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTACCGGCCGCGCTGTggg > 3:341419/1‑95 (MQ=255) cc‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTACCGGCCGCGCTGTggg < 4:341419/95‑1 (MQ=255) | CCACCCGGCAGCCTGCGCAGCGAGGGGGGCGAGGGTACGGTGGCGCTGTTCGGGCAGATGAAAGCCGGTGAAGTGAAAGCCTGCTGGGTCATCTGCAGCAACCCGGTGGCCAGTGTCGCCAA‑CCGTCAGCAAGTGATCGAC‑GGCC‑TGCGCAAGGCCGAACTGGTCATTACCCAGGACGCCTTCCTCGACACCGAAACCAACCGTTACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGC > NC_002947/1900560‑1900848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |