New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 13986	88 (1.230)	5 (0.070)	5/250	NT	5.4%	coding (657/2421 nt)	gyrB	DNA gyrase subunit B
	?	NC_002947	= 14012	92 (1.380)					coding (683/2421 nt)	gyrB	DNA gyrase subunit B

CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/13830‑13986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaagtacTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAATGTTCT  <  NC_002947/14012‑13865                                                                                                                                                                                                                                                                                                                    CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCT                                                                                                                                                              >  6:385248/1‑149    CATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCA                                                                                                                                                           <  3:65069/149‑1     ATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGG‑CAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAG                                                                                                                                                         <  5:32855/149‑1      TCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGCGGTTTGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAA                                                                                                                                                          <  1:320784/149‑1         ACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTAAAGTAC                                                                                                                                                      >  4:241871/1‑149         ACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACAGCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTAC                                                                                                                                                      >  5:422798/1‑149         ACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTGCAGCTGGGACATCCTGGCCAAGCGCATCCGAGAGATGTCGTTCATCAACTCGGGC‑GGTGGCATTCTGCGGAAGGAGGAGCTCAGCGGGAAGGAAGAGTACTTCAAGTAg                                                                                                                                                      >  4:291737/1‑148                         TGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTT                                                                                                                                                             <  1:127332/126‑1                         TGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTT                                                                                                                                                             >  2:127332/1‑126                                TTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACTCGACGAACGCACGCAGACCGCC                                                                                                                               >  6:280923/1‑149                                       ACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACTCGACGAACGCACGCAGACCGCCTTCGTAC                                                                                                                        <  5:280923/149‑1                                            CACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGA                                                                                                                    <  3:155333/148‑1                                                                                      TCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAAC                                                                                                               >  2:8383/1‑111                                                                                      TCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAAC                                                                                                               <  1:8383/111‑1                                                                                                                                                         AAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAAT       >  7:129287/1‑149                                                                                                                                                         AAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGAGCTCATCCTTCAGCAGCATGCCAACGCCCGAGTTGAGGAACGACAGCACGCGGATGAGCTTGGCCAGGATGTCCCAGCTGAAGTGAAT       >  7:165737/1‑149                                                                                                                                                         AAGTACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGATGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAA        <  5:322321/148‑1                                                                                                                                                             ACTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAATGTTC   >  5:157019/1‑149                                                                                                                                                              CTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAATGTTCT  <  4:148253/149‑1                                                                                                                                                              CTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAATGTTC   <  7:387745/148‑1                                                                                                                                                                                                                                                                                                                    CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCGGGC‑GTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/13830‑13986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaagtacTCGACGAACGCACGCAGACCGCCTTCGTACTTGAAGAACTCTTCCTTACCGCTGCGCTCATCCTTCAGCAGAATGCCAACGCCCGAGTTGAGGAACGACAGCTCGCGGATGCGCTTGGCCAGGATGTCCCAGCTGAAGTGAATGTTCT  <  NC_002947/14012‑13865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.