| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 612221 | NA (NA) | 13 (0.250) +GGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGA |
6/196 | NT | 20.5% | intergenic (+152/+65) | PP_0526/dxs | transposase/1‑deoxyxylulose‑5‑phosphate synthase |
| ? | NC_002947 | = 2436665 | 69 (0.960) | intergenic (+243/‑416) | PP_2134/fadB | transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase | |||||
GCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/612077‑612221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTT < NC_002947/2436665‑2436606 |||||||||||||||||||||||||||||||||||| ggTGCAACGGATGCCGGCCAAAATTTAGGGCATTATTCAATGGCGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGG < 2:358876/147‑1GCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGCGAGGCCGATGGCGTTTTTACTCAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGG < 4:239400/149‑1 GCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCA > 5:338410/1‑149 CAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCA < 7:201500/148‑1 AACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATC > 3:126603/1‑149 CGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATC > 7:255791/1‑147 AGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGC < 2:196049/149‑1 GCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGAACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCT > 2:241073/1‑149 CCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGG > 4:425537/1‑149 CCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAA > 6:70877/1‑149 GCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAA < 2:425587/149‑1 AGTATCCAATGCAGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTCCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCAGGCCATAGAATCTCCTACGGGCGCATCCAGGCTGGTCAATCTGTTCTGTAAC > 2:384651/1‑148 GTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGA < 6:432561/149‑1 TCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACA > 5:104320/1‑148 AATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTAGTTAACTACAAAGC > 4:264025/1‑149 ATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGTCCATAGAATCTCCTACGTGGTCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCG < 1:241073/149‑1 CTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCG > 7:136903/1‑149 CTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCG < 8:118555/149‑1 ATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGC < 2:67010/138‑1 ATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGC > 1:67010/1‑138 TCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCAAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCAC > 1:142957/1‑149 GCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCT > 6:275982/1‑149 GGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCC < 5:322273/149‑1 GGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCC < 6:104320/149‑1 TTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGC < 4:126603/149‑1 GAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCG < 5:275982/149‑1 GAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCGAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTT < 2:142957/149‑1 |||||||||||||||||||||||||||||||||||| GCTGCAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/612077‑612221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTT < NC_002947/2436665‑2436606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |