| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 886391 | 99 (1.380) | 5 (0.070) | 5/262 | NT | 5.2% | coding (2302/2718 nt) | PP_0767 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 886426 | 86 (1.230) | coding (2337/2718 nt) | PP_0767 | LuxR family transcriptional regulator | |||||
CCGTTGCACATTGCGTTGCAGCAGGCAGCGCTCGATCGCATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/886247‑886391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAGCCATTGGCTCAGGGCGCTGACGGTAAGCATCATGCCGCCACTGGCCTGGCCGCGCTTTACCAGGCATGCCAGGCGTTGCACGGCATCGTCGCTACGCAACTGGATGCGATC < NC_002947/886426‑886280 CCGTTGCACATTGCGTTGCAGCAGGCAGCGCTCGATCGCATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATG < 1:278735/143‑1CCGTTGCACATTGCGTTGCAGCAGGCAGCGCTCGATCGCATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATG > 2:278735/1‑143 GATCGCATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGCTTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAA < 3:366088/147‑1 ATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGCCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAGCCA > 3:143379/1‑145 ATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGCCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAGCCA < 4:143379/145‑1 ACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGCCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAG > 7:49957/1‑113 ACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGCCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAG < 8:49957/113‑1 GCCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAGCCATTGGCTCAGGGCGCTGACGGTAAGCATCATGCCGCCACTGGCCTGGCCGCGCTTTACCAGGCATGCCAGGCGTTGCACGGCATCGTCGCTACGCAACTGGATGCGATC < 5:32045/149‑1 CCGTTGCACATTGCGTTGCAGCAGGCAGCGCTCGATCGCATCCAGTTGCGTAGCGACGATGCCGTGCAACGCCTGGCATGCCTGGTAAAGCGCGGCCAGGCCAGTGGCGGCATGATGCTTACCGTCAGCGCCCTGAGCCAATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/886247‑886391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTGCCCTTCCTTGCCTTCGTCCAGCAGCAGGGCAAGCCATTGGCTCAGGGCGCTGACGGTAAGCATCATGCCGCCACTGGCCTGGCCGCGCTTTACCAGGCATGCCAGGCGTTGCACGGCATCGTCGCTACGCAACTGGATGCGATC < NC_002947/886426‑886280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |