New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1090249 =	67 (0.940)	4 (0.060)	4/256	NT	6.4%	coding (1110/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	1090289 =	53 (0.770)					coding (1150/1380 nt)	fumC‑I	class 2 fumarate hydratase

GGCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090399‑1090249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatcGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGAT  >  NC_002947/1090289‑1090435                                                                                                                                                                                                                                                                                                                 GGCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGG                                                                                                                                                               <  1:365478/146‑1  GCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCAT                                                                                                                                                           <  3:208875/149‑1                                                                                                           CTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAG                                                       <  6:358638/141‑1                                                                                                           CTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAG                                                       >  5:358638/1‑141                                                                                                             GGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAA                                            >  4:93054/1‑148                                                                                                                                     GCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGG                   <  3:93054/149‑1                                                                                                                                                  GCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCCTGGGCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAAT         >  1:147161/1‑148                                                                                                                                                   CCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATC     >  2:45015/1‑149                                                                                                                                                    CATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATC     >  3:350894/1‑148                                                                                                                                                    CATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATC     >  5:329069/1‑148                                                                                                                                                    CATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATC        <  5:195043/145‑1                                                                                                                                                    CATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATC        >  6:195043/1‑145                                                                                                                                                     ATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACAGGAGCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCAT      >  1:136419/1‑149                                                                                                                                                     ATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA   >  3:151257/1‑149                                                                                                                                                     ATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA   <  1:264632/149‑1                                                                                                                                                     ATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA   >  6:1185/1‑149                                                                                                                                                      TCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGAT  <  7:339279/149‑1                                                                                                                                                                                                                                                                                                                 GGCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090399‑1090249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatcGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCAC‑‑G‑GCGTTGAATCCGATCATCGGCTACCTCAAGGCC‑‑GCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGAT  >  NC_002947/1090289‑1090435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.