New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1098607	56 (0.780)	8 (0.120)	5/254	NT	12.0%	coding (959/975 nt)	kdsD	D‑arabinose 5‑phosphate isomerase
	?	NC_002947	= 1098630	64 (0.940)					coding (936/975 nt)	kdsD	D‑arabinose 5‑phosphate isomerase

TGAACGTCTTGAATTCGCTGCCATCCTCGAGGAAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1098458‑1098607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcCCTGAACATGCATGACCTGCTGCGCGCCGGCGTAATGTAAAGGAGCGATGGAATGAACCAGGACCTCATGCAACGCGGCAAAGGCATCAAGCTGGCAGTGTTCGACGTGGACGGCGTGCTCACCGACGGGCGCCTGTACTTCCT  <  NC_002947/1098630‑1098487                                                                                                                                                                                                                                                                                                        TGAACGTCTTGAATTCGCTGCCATCCTCGAGGAAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCG                                                                                                                                                   >  4:345379/1‑149  GAACGTCTTGAATTCGCTGCCATCCTCGAGGAAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGC                                                                                                                                                  >  6:274483/1‑149                                GAAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGG                                                                                                                    <  2:46115/149‑1                                 AAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGC                                                                                                                   <  1:52751/149‑1                                 AAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGC                                                                                                                   <  3:153990/149‑1                                    TACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCG                                                                                                                  <  5:379636/147‑1                                    TACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCG                                                                                                                  <  5:386520/147‑1                                    TACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCG                                                                                                                  >  6:379636/1‑147                                    TACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCG                                                                                                                  >  6:386520/1‑147                                      CAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTATGCCCCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCGTA                                                                                                                <  7:201972/147‑1                                                                                                                                                  GGCGCCCTGAACATGCATGACCTGCTGCGCGCCGGCGTAATGTAAAGGAGCGATGGAATGAACCAGGACCTCATGCAACGCGGCAAAGGCATCAAGCTGGCAGTGTTCGACGTGGACGGCGTGCTCACCGACGGGCGCCTGTACTTCCT  <  6:426368/149‑1                                                                                                                                                                                                                                                                                                        TGAACGTCTTGAATTCGCTGCCATCCTCGAGGAAGTACAGGCGCCCGTCGGTGAGCACGCCGTCCACGTCGAACACTGCCAGCTTGATGCCTTTGCCGCGTTGCATGAGGTCCTGGTTCATTCCATCGCTCCTTTACATTACGCCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1098458‑1098607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgcCCTGAACATGCATGACCTGCTGCGCGCCGGCGTAATGTAAAGGAGCGATGGAATGAACCAGGACCTCATGCAACGCGGCAAAGGCATCAAGCTGGCAGTGTTCGACGTGGACGGCGTGCTCACCGACGGGCGCCTGTACTTCCT  <  NC_002947/1098630‑1098487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.