New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1265490 =	53 (0.740)	3 (0.040)	3/258	NT	5.4%	intergenic (‑71/+56)	PP_1106/quiP	hypothetical protein/acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1265525 =	55 (0.800)					intergenic (‑106/+21)	PP_1106/quiP	hypothetical protein/acyl‑homoserine lactone acylase QuiP

TGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1265641‑1265490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGC  >  NC_002947/1265525‑1265668                                                                                                                                                                                                                                                                                                           TGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCC                                                                                                                                                     >  6:425188/1‑149    gTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTC                                                                                                                                                  >  1:395872/2‑149    TTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTC                                                                                                                                                  >  1:390711/1‑149         AGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTC                                                                                                                                                  <  3:79013/144‑1         AGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTAGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTAAGC‑ATCTCCCTgcaga                                                                                                                                              >  4:79013/1‑143                  CATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGAGC‑TGCTGAAAAACTTCATCAAGCCCCCTCATGCGCCCCTGAA                                                                                                                                     <  3:333639/148‑1                                                                                                                     TGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAA                                                                          >  3:368135/1‑108                                                                                                                     TGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAA                                                                          <  4:368135/108‑1                                                                                                                                                     CCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGC  >  6:437346/1‑149                                                                                                                                                                                                                                                                                                           TGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGC‑AGCTCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1265641‑1265490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGC  >  NC_002947/1265525‑1265668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.