| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1427107 | NA (NA) | 5 (0.070) | 3/256 | NT | NA | coding (1005/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | = 1427157 | NA (NA) | coding (1055/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426954‑1427107‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC < NC_002947/1427157‑1427011 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 1:201872/1‑149CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 7:308910/1‑149CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGACAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGAC > 5:429442/1‑149 GCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGGGAGCAGGAAGAAACGCCAAGTGGCAAGGGCGTGGAGGTGCGCCTGCCTAGGCTATGGGATGCGCGGGCACCAGCGGCGAAGCCTGCG > 4:238240/1‑149 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC < 7:393514/149‑1 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC < 2:263253/149‑1 CCGGCGAACGGGTGTTGGGCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC < 8:369023/149‑1 GTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC < 7:185491/138‑1 GTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC > 8:185491/1‑138 GGTGAACAGTCAGAAACGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGcc < 6:330235/149‑3 GTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCT > 4:272115/1‑149 TGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTT < 6:1639/149‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGG < 3:48752/149‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTG < 3:272115/148‑1 CTGCGCAGCAGCATTCTGAGCCTGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT < 6:57111/149‑1 CTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT < 7:96498/149‑1 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT > 3:121275/1‑148 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT > 5:315708/1‑148 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTC > 8:219342/1‑134 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTC < 7:219342/134‑1 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTG > 3:123314/1‑120 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTG < 4:123314/120‑1 TGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCACTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT > 5:86465/1‑148 GCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGT > 5:415847/1‑147 CGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCA < 5:139990/148‑1 CGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTC < 7:197528/147‑1 GCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC < 1:292974/149‑1 GCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC > 6:232874/1‑149 CAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTACGGAGTCCCACTTCCACGCCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC < 1:296889/149‑1 CAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCT > 6:112246/1‑78 CAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCT < 5:112246/78‑1 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426954‑1427107‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACG‑CCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGC < NC_002947/1427157‑1427011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |