New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 176985061 (0.850)5 (0.070) 5/256 NT 7.9% coding (598/3000 nt) PP_1579 hypothetical protein
?NC_002947 = 1769872 58 (0.850)coding (620/3000 nt) PP_1579 hypothetical protein

TTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1769706‑1769850
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccggAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTGTG  <  NC_002947/1769872‑1769727
                                                                                                                                                                                                                                                                                                   
TTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGAAGTGTCGTATGCGTTCTACGGACCG                                                                                                                                                     >  8:158684/1‑144
                       CACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGAGATCGCCGGCAAGGCTCTCCCCCGGT                                                                                                                         <  3:147366/149‑1
                        ACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGAGGTGTCGTATGCGTTCTACGGACCGGAGATCGCCGGCAAGGCTCTCCCCCGGTC                                                                                                                        <  7:158684/149‑1
                              CTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGA                                                                                                                  <  3:295900/149‑1
                                                              GATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTA                                                                                                                    >  5:257921/1‑115
                                                              GATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTA                                                                                                                    <  6:257921/115‑1
                                                                                                                                            ACCGGAGCTCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTG    >  8:209953/1‑149
                                                                                                                                             CCGGAGATCGCCGGCTAGGCTGTCCCCCGGTCCGTAGAACGCATACGACACTTCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCTCAGGCTGGTGT   <  4:58357/149‑1
                                                                                                                                             CCGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTct   >  4:344433/1‑147
                                                                                                                                              CGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGTTGCTGGGCAAGATGGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTGT   >  5:369863/1‑148
                                                                                                                                              CGGAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTGTG  <  3:14445/149‑1
                                                                                                                                                                                                                                                                                                   
TTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1769706‑1769850
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccggAGATCGCCGGCAAGGCTCTCCCCCGGTCCGTAGAACGCATACGACACATCGGCGCCGAAGGCAGCCAGCGGGGTATCTCCGATCTTGATGCTGCTGGGCAAGATCGAGTGCGAGCCCGCTCCCACGCACAAGCACAGGCTGGTGTG  <  NC_002947/1769872‑1769727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.