New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2075067	65 (0.910)	5 (0.070)	3/252	NT	7.7%	coding (312/1188 nt)	ygaY	transporter YgaY
	?	NC_002947	= 2075102	59 (0.880)					coding (277/1188 nt)	ygaY	transporter YgaY

CATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2074914‑2075067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgccTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGCTGACCGGGCTGTTCTCGGTGGTGGCACAGATCCTCGTGCCGATGGCAGCGACCCTGAGTGAGCCCCATCAGCGTGGGCGCGCGGTCGGCACACTGATGAGCGGCCTGC  <  NC_002947/2075102‑2074955                                                                                                                                                                                                                                                                                                                CATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGT                                                                                                                                                             >  5:78765/1‑147  ATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAG                                                                                                                                                          >  5:113057/1‑149      AGCCGGCAGAAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCTGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCC                                                                                                                                                      >  4:86944/1‑149                                           CAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGG                                                                                                                 >  2:248961/1‑149                                              GCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGC                                                                                                              <  1:248961/149‑1                                              GCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGC                                                                                                              <  6:246673/149‑1                                              GCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGGCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGC                                                                                                              <  6:328797/149‑1                                                     ATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGCTGACCGG                                                                                                       <  5:101661/149‑1                                                                                                                                                     AGCGCCTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGCTGACCGGGCTGTTCTCGGTGGTGGCACAGATCCTCGTGCCGATGGCAGCGACCCTGAGTGAGCCCCATCAGCGTGGGCGCGCGGTCGGCACACTGATGAGCGG       >  1:5023/1‑149                                                                                                                                                          CTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGCTGACCGGGCTGTTCTCGGTGGTGGCACAGATCCTCGTGCCGATGGCAGCGACCCTGAGTGAGCCCCATCAGCGTGGGCGCGCGGTCGGCACACTGATGAGCGGCCTGC  >  2:42086/1‑149                                                                                                                                                                                                                                                                                                                CATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2074914‑2075067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgccTGTGCACCCAGCCTGCCCTGGCTGCTGCTCGGCACGGCGCTGACCGGGCTGTTCTCGGTGGTGGCACAGATCCTCGTGCCGATGGCAGCGACCCTGAGTGAGCCCCATCAGCGTGGGCGCGCGGTCGGCACACTGATGAGCGGCCTGC  <  NC_002947/2075102‑2074955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.