New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2082517	59 (0.820)	4 (0.060)	3/258	NT	6.1%	coding (717/954 nt)	PP_1861	LysR family transcriptional regulator
	?	NC_002947	= 2082554	67 (0.970)					coding (680/954 nt)	PP_1861	LysR family transcriptional regulator

TGCGAGAGTTCGTTTCATGTGCCAGGCGTAGCGCGTAAATGCCGCTGGTCTCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2082366‑2082517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCTGGGTATAGCCCACCTTCCCACTTGGCTGATCAGTGAATACCTGCTGCGCGGCGAGCTGATCCCGTTGTTCTGCGACGGCGGCTTGCCTGAAGCTGAGACCAGCG  <  NC_002947/2082554‑2082408                                                                                                                                                                                                                                                                                                             TGCGAGAGTTCGTTTCATGTGCCAGGCGTAGCGCGTAAATGCCGCTGGTCTCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGG                                                                                                                                                        >  2:66052/1‑149                                             CTGGCCTCACCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGC                                                                                                            <  8:273293/149‑1                                                GTCTCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCGCCAACAACGCCGAAATCCTGCTGTTCGGCGCCCTCGCCGGCCT                                                                                                          <  4:3098/148‑1                                                   TCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCT                                                                                                          >  5:381963/1‑145                                                   TCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCT                                                                                                          <  6:381963/145‑1                                                                                                                                                      CCGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCTGGGTATAGCCCACCTTCCCACTTGGCTGATCAGTGAATACCTGCTGCGCGGCGAGCTGATCCCGTTGTTCTGCGACGGCGGCTTGCCTGAAGCTGAGACCAGC   >  2:221662/1‑149                                                                                                                                                       CGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCTGGGTATAGCCCACCTTCCCACTTGGCTGATCAGTGAATACCTGCTGCGCGGCGAGCTGATCCCGTTGTTCTGCGACGGCGGCTTGCCTGAAGCTGAGACCAGCG  >  7:29964/1‑149                                                                                                                                                       CGCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCTGGGTATAGCCCACCTTCCCACTTGGCTGATCAGTGAATACCTGCTGCGCGGCGAGCTGATCCCGTTGTTCTGCGACGGCGGCTTGCCTGAAGCTGAGACCAGCG  >  8:217454/1‑149                                                                                                                                                                                                                                                                                                             TGCGAGAGTTCGTTTCATGTGCCAGGCGTAGCGCGTAAATGCCGCTGGTCTCAGCTTCAGGCAAGCCGCCGTCGCAGAACAACGGGATCAGCTCGCCGCGCAGCAGGTATTCACTGATCAGCCAAGTGGGAAGGTGGGCTATACCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2082366‑2082517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCAACAACGCCGAAACCCTGCTGTTCGGCGCCCTCGCCGGCCTGGGTATAGCCCACCTTCCCACTTGGCTGATCAGTGAATACCTGCTGCGCGGCGAGCTGATCCCGTTGTTCTGCGACGGCGGCTTGCCTGAAGCTGAGACCAGCG  <  NC_002947/2082554‑2082408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.