| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2099960 = | 20 (0.280) | 7 (0.120) | 6/222 | NT | 25.7% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100055 = | 24 (0.410) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
GCGCGGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2100128‑2099960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcaa‑gcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG > NC_002947/2100055‑2100202 GCGCGGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 7:193763/149‑1GCGCGGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 6:369797/149‑1GCGCGGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 5:281895/149‑1 GGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA < 2:349471/149‑1 AAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCTT‑GCCCGttcc < 7:324544/149‑5 CCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTC > 8:247773/1‑112 CCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTC < 7:247773/112‑1 CCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGC > 5:289906/1‑149 CCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCCAAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGA < 4:382743/143‑1 CCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCCAAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGA > 3:382743/1‑143 CACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCG > 4:301961/1‑149 GGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACT > 1:219754/1‑149 GAACGGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTGGAGCCCCTGTTGCCGGCACACCGCCCG > 2:306537/1‑149 cgGGGCAACGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAGCTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGC < 5:126097/147‑1 GGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAA > 4:259118/1‑139 GGGCAA‑GCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAA < 3:259118/139‑1 CCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTG > 4:329591/1‑149 CCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGG < 3:299922/149‑1 GCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGG < 6:119992/149‑1 GAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCAC < 6:281895/149‑1 AGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACC < 6:98187/149‑1 GGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCA < 2:219754/148‑1 GCGAGCAGCGGACCCCAAATAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTATGGACAGAGACGAATCCGTACTGGCGCCCCTTGAACACCTGTTGCCTGCACAACGCCGGAACATCGACTGGGGCACCAGAC > 4:62781/1‑149 CGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACT < 8:324544/149‑1 CGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG < 5:247752/149‑1 GCGCGGTCCAGAAAAGCGATCAAGCGAGCGTCCATGACGACTCCTAACAATCTCAGTTTTTTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAA‑GCCCGCGGAGGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2100128‑2099960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcaa‑gcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG > NC_002947/2100055‑2100202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |