New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2260214	72 (1.010)	5 (0.070)	5/256	NT	6.9%	coding (802/2736 nt)	fimV	motility protein FimV
	?	NC_002947	= 2260242	66 (0.960)					coding (830/2736 nt)	fimV	motility protein FimV

AGGGCGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2260062‑2260214 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGGCCTTCACGCCAGGCCGCA  <  NC_002947/2260242‑2260096                                                                                                                                                                                                                                                                                                              AGGGCGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGC                                                                                                                                                         <  5:304059/149‑1   GGCGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCT                                                                                                                                                       >  8:148987/1‑149     CGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGG                                                                                                                                                     >  2:363287/1‑149     CGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGG                                                                                                                                                     <  3:128198/149‑1     CGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGG                                                                                                                                                     <  5:8943/149‑1              CCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGCCTGCACCG                                                                                                                                            >  2:193648/1‑149                                GTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGC‑CCGGCCTGGTTGCCCGGGCTGA                                                                                                                         <  3:98102/149‑1                                      GGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGG                                                                                                                    <  1:193648/149‑1                                                                                 CTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAG                                                                                                               <  1:400113/111‑1                                                                                 CTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAG                                                                                                               >  2:400113/1‑111                                                                                                                                                ctcgGCCTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGG                    <  4:274611/135‑1                                                                                                                                                ctagGCCTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGG                    >  3:274611/5‑139                                                                                                                                                      CTGGCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGGCCTTCACGCCAGGCC     >  1:254609/1‑148                                                                                                                                                         GCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGGCCTTCACGCCAGGCCGCA  >  2:165466/1‑148                                                                                                                                                         GCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGGCCTTCACGCCAGGCCGCA  <  3:34744/148‑1                                                                                                                                                                                                                                                                                                              AGGGCGAGGCGAACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2260062‑2260214 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCTGCACCGGCCTGGTTGCCCGGGCTGACCAGGCGCAGGTTGTCGCCCTGGGCGATACGCGACGGTGCAGCCTCGGCGGCGCCACGGCGAGTGGCATCCAGCTGGCGGGCACGCGGTCCCAGGCGACGGCCTTCACGCCAGGCCGCA  <  NC_002947/2260242‑2260096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.