New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2387658	58 (0.810)	5 (0.070)	3/258	NT	8.0%	coding (418/1023 nt)	pyrD	dihydroorotate dehydrogenase
	?	NC_002947	= 2387692	59 (0.860)					coding (452/1023 nt)	pyrD	dihydroorotate dehydrogenase

GCAGCCTGGCAACCCCAAGCCACGGTTGTTCCGCCTGCCGGAAGCCACGGCCATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2387510‑2387658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTGATGCCCAGCACCCCCTTGTAGCGCGAGGCGCGTACGCGCCCCAGCAGGTGATCAACGCCCAGGTTGTTGAAGCCCATGCGGTTGATGATGGCCGTGGCTTCCG  <  NC_002947/2387692‑2387548                                                                                                                                                                                                                                                                                                        GCAGCCTGGCAACCCCAAGCCACGGTTGTTCCGCCTGCCGGAAGCCACGGCCATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCG                                                                                                                                                   <  7:289293/149‑1                                              CACGGCCATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTGATG                                                                                                      <  8:263249/149‑1                                                     ATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTG                                                                                                         <  1:226108/139‑1                                                     ATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTG                                                                                                         >  2:226108/1‑139                                                     ATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTG                                                                                                         <  5:427676/139‑1                                                     ATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTG                                                                                                         >  6:427676/1‑139                                                                                                                                                 CATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTGATGCCCAGCACCCCCTTGTAGCGCGAGGCGCGTACGCGCCCCAGCAGGTGATCAACGCCCAGGTTGTTGAAGCCCATGCGGTTGATGATGGCCGTGGCTTCC   >  2:392721/1‑149                                                                                                                                                  ATCGACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTGATGCCCAGCACCCCCTTGTAGCGCGAGGCGCGTACGCGCCCCAGCAGGTGATCAACGCCCAGGTTGTTGAAGCCCATGCGGTTGATGATGGCCGTGGCTTCCG  <  1:420140/149‑1                                                                                                                                                                                                                                                                                                        GCAGCCTGGCAACCCCAAGCCACGGTTGTTCCGCCTGCCGGAAGCCACGGCCATCATCAACCGCATGGGCTTCAACAACCTGGGCGTTGATCACCTGCTGGGGCGCGTACGCGCCTCGCGCTACAAGGGGGTGCTGGGCATCAACATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2387510‑2387658 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgACAGCACGTTCGACCGGGGTATCGAAGTTCTTGCCGATGTTGATGCCCAGCACCCCCTTGTAGCGCGAGGCGCGTACGCGCCCCAGCAGGTGATCAACGCCCAGGTTGTTGAAGCCCATGCGGTTGATGATGGCCGTGGCTTCCG  <  NC_002947/2387692‑2387548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.