New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2413147	NA (NA)	7 (0.100)	6/260	NT	NA	intergenic (+411/‑10)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	= 2413196	NA (NA)					coding (40/1302 nt)	PP_2114	transposase

TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2412996‑2413147 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGAT  <  NC_002947/2413196‑2413049                                                                                                                                                                                                                                                                                                              TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAATTCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCA                                                                                                                                                         >  7:181840/1‑149    TTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC                                                                                                                                                       <  8:69575/148‑1                                        CCGCCGTAAGGGCCGTCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGG                                                                                                                  >  7:367786/1‑149                                              TAAGGGCCATCCCTTTCAAGGTCTCCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACG                                                                                                          <  6:83299/149‑1                                                 cGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGAAGTACAAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC                                                                                                         <  3:340461/146‑1                                                    CCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTG‑AATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCGAGGCAAGTTTGGCCATTACGCTG                                                                                                       <  2:239007/145‑1                                                    CCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTG‑AATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCGAGGCAAGTTTGGCCATTACGCTG                                                                                                       >  1:239007/1‑145                                                             TCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGC                                                                                               <  7:69558/147‑1                                                                     TTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCG                                                                                     <  8:367786/149‑1                                                                                                                                                     ACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGG     >  5:439745/1‑149                                                                                                                                                     ACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGG     >  7:131075/1‑149                                                                                                                                                     ACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGG     >  5:5699/1‑149                                                                                                                                                     ACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGG     >  2:343571/1‑149                                                                                                                                                     ACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGG     >  2:33331/1‑149                                                                                                                                                      CCCACTCCGGCGCAATGGCCTGCTCCTAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGG    >  2:106481/1‑149                                                                                                                                                      CCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCTAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCA                                <  7:278231/121‑1                                                                                                                                                      CCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGG    <  3:18523/149‑1                                                                                                                                                      CCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGG    <  7:352460/149‑1                                                                                                                                                      CCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCA                                >  8:278231/1‑121                                                                                                                                                       CCACTCCGTCTCAATGGCCTGCTCCAATGCAATTTTGGCCATTACTCTGGCGGGTGCTTTTTTCTCGAATCTCGCTAGTACATCAGCCCACATCTCTCGTGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA   <  8:43799/149‑1                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA   <  5:434832/149‑1                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA   >  7:89521/1‑149                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA   <  1:79637/149‑1                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA   >  1:420026/1‑149                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGG                                                                                                  <  4:211805/54‑1                                                                                                                                                       CCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGG                                                                                                  >  3:211805/1‑54                                                                                                                                                        CACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTAGGGGCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGAT  >  3:253515/1‑149                                                                                                                                                                                                                                                                                                              TTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2412996‑2413147 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGAT  <  NC_002947/2413196‑2413049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.