New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2813950	52 (0.730)	4 (0.060)	4/252	NT	6.9%	coding (87/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
	?	NC_002947	= 2813977	59 (0.880)					coding (114/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta

GACAACGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2813797‑2813950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggcAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCATGGACAGGCGGGCGACCAGTTCGTCACGGGAGACTTGCGGGTTGACCCAACCGCGCAGCCACTGTTCACTGAATTTCATGCTGTTCTCCTGAAAGTTGCGTCGATT  <  NC_002947/2813977‑2813837                                                                                                                                                                                                                                                                                                         GACAACGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGG                                                                                                                                                    >  2:194872/1‑149    AACGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCG                                                                                                                                                 >  2:129763/1‑149    AACGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCG                                                                                                                                                 >  4:430209/1‑149      CGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGC                                                                                                                                               <  6:213848/149‑1          CTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGCAGCG                                                                                                                                           >  8:309829/1‑149                    TAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGCAGCGGGGGTAACAC                                                                                                                                 >  3:295400/1‑149                                         AATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGCAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCA                                                                                                            <  6:375197/149‑1                                          ATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGCAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCAT                                                                                                           <  7:309829/149‑1                                           TCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGCAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCATG                                                                                                          <  4:295400/149‑1                                                                                                                                                   TGGCCGGCAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCATGGACAGGCGGGCGACCAGTTCGTCACGGGAGACTTGCGGGTTGACCCAACCGCGCAGCCACTGTTCACTGAATTTCATGCTGTTCTCCTGAAAGTTGCGTCGATT  >  3:260452/1‑149                                                                                                                                                                                                                                                                                                         GACAACGACCTGCGGTTCCTAGCCCAATTCCGCTAGGCCCAATCGACGCAACTTTCAGGAGAACAGCATGAAATTCAGTGAACAGTGGCTGCGCGGTTGGGTCAACCCGCAAGTCTCCCGTGACGAACTGGTCGCCCGCCTGTCCATGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2813797‑2813950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggcAGCGGGGGTAACACTGTCAACTTCGAGGCCGGCCATGGACAGGCGGGCGACCAGTTCGTCACGGGAGACTTGCGGGTTGACCCAACCGCGCAGCCACTGTTCACTGAATTTCATGCTGTTCTCCTGAAAGTTGCGTCGATT  <  NC_002947/2813977‑2813837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.