| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3029714 = | 43 (0.600) | 4 (0.060) | 4/254 | NT | 9.3% | coding (1367/1653 nt) | pcaY | aromatic acid chemoreceptor |
| ? | NC_002947 | 3029774 = | 37 (0.550) | coding (1427/1653 nt) | pcaY | aromatic acid chemoreceptor | |||||
CTTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3029863‑3029714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAGTAGACCGCAACTTGCTGAACATCCGCGAACTGTCCAACCATTCCGCTGCGGGTGCG > NC_002947/3029774‑3029919 CTTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGC < 6:364681/147‑1 TTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGG > 4:243621/1‑149 TTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGG > 5:459/1‑149 TTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGG > 8:179348/1‑149 CCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGG > 2:135520/1‑149 CTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGG < 6:322816/149‑1 CTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGG > 5:322816/1‑148 CAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAG > 1:132704/1‑149 GCTGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAGTAGACCGCAACTTGCTGAACATCCGCGAACTGTCCAACCATTCCGCTGCGGGTG > 7:13270/1‑149 TGGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAGTAGACCGCAACTTGCTGAACATCCGCGAACTGTCCAACCATTCCGCTGCGGGTGCG > 2:129364/1‑149 GGAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAGTAGACCGCAACTTGCTGAACATCCGCGAACTGTCCAACCATTCCGCTGCGGGTGCG > 2:220385/1‑148 CTTCCCGCGCCACCTGAGCCTGCTCTTCGGCCGCACTGGCAATGACCAGATTGCGCTCGTTGATTTCGCCGATCGCACTGTAGATGCCCTCCAGCACTTGCCCCGAGGCCAGGGTCACGTCCAGTGTCGACTGGGCGCGGTTGGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3029863‑3029714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggAGGGCATCTACAGTGCGATCGGCGAAATCAACGAGCGCAATCTGGTCATTGCCAGTGCGGCCGAAGAGCAGGCTCAGGTGGCGCGGGAAGTAGACCGCAACTTGCTGAACATCCGCGAACTGTCCAACCATTCCGCTGCGGGTGCG > NC_002947/3029774‑3029919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |