New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 321103147 (0.660)3 (0.040) 3/256 NT 5.8% coding (68/1254 nt) PP_2815 hypothetical protein
?NC_002947 = 3211067 53 (0.770)coding (104/1254 nt) PP_2815 hypothetical protein

TTCATGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3210881‑3211031
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTGCAGT  <  NC_002947/3211067‑3210920
                                                                                                                                                                                                                                                                                                           
TTCATGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGC                                                                                                                                                        >  2:92791/1‑149
 TCATGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCG                                                                                                                                                       >  3:31800/1‑149
                                              CATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTT                                                                                                          <  5:62881/149‑1
                                              CATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTT                                                                                                          >  8:234623/1‑149
                                                TTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGC                                                                                                        <  7:234623/149‑1
                                                                                                                                                  GGCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTG      <  6:109933/149‑1
                                                                                                                                                  GGCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTG      <  6:353655/149‑1
                                                                                                                                                   GCGCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTG      >  8:77178/1‑148
                                                                                                                                                     GCTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTGCAG   >  3:22890/1‑149
                                                                                                                                                      CTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTGCAGT  <  2:191198/149‑1
                                                                                                                                                      CTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTGCAGT  <  6:119182/149‑1
                                                                                                                                                                                                                                                                                                           
TTCATGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGCTTATGCGCAAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3210881‑3211031
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcTCGACCCACTCGGCTGGCAGCGCCTGAGCGAGTTCGGCGCCTTTGCGCATAAGCTCGCGAACGGTTTCCGAGGGGCGTGGCCAGGGCGACGGCGTGCTGGTCATGGGCGGTGCAAATCACTCAAAAATCGGCTGGAAAATGGTGCAGT  <  NC_002947/3211067‑3210920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.