New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3217292 =	50 (0.700)	3 (0.040)	3/256	NT	5.7%	coding (82/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217326 =	51 (0.750)					coding (116/1407 nt)	oprJ	outer membrane protein OprJ

TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGAC‑‑GATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217445‑3217292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGT  >  NC_002947/3217326‑3217471                                                                                                                                                                                                                                                                                                                TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGAC‑‑GATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCG                                                                                                                                                         <  6:98489/149‑1     GCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGAC‑‑GATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGC                                                                                                                                                     >  6:373524/1‑149     GCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGAC‑‑GATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGG                                                                                                                                                      <  7:8616/148‑1        CAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGACGGGATGAATCCCTGCCAGTCAAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCG                                                                                                                                                    >  1:120293/1‑149                                                                                                                         ATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAATGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTG                                   >  8:265256/1‑149                                                                                                                          TCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGC                                         >  3:323961/1‑142                                                                                                                          TCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGC                                         <  4:323961/142‑1                                                                                                                                                        GGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGATGTCGAGCAGGgtc    <  7:249616/149‑4                                                                                                                                                        GGGCGATGCAGCCGGCCATACTGGCCACACGGTGGAGCAGTAGGACTGGCACGCATTCATCGTCGACCCAGTGATGCGTCAGCTGGTCGGTACCGCGCAGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCC    >  2:360193/1‑149                                                                                                                                                          GCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGT  >  6:48542/1‑149                                                                                                                                                                                                                                                                                                                TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGAC‑‑GATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217445‑3217292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGT  >  NC_002947/3217326‑3217471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.