| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3611282 = | 65 (0.910) | 4 (0.060) | 4/256 | NT | 6.2% | coding (2402/3396 nt) | mcoA | Mn(II) copper oxidase A |
| ? | NC_002947 | 3611340 = | 59 (0.860) | coding (2344/3396 nt) | mcoA | Mn(II) copper oxidase A | |||||
GTTCATCTTTGGCCGCTCTGACGGCACGGACACCACCCCGTGGACCATCAAGACCGACGGCGGCTTTGGCTACAGCATGGACCCACGCCGTATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3611434‑3611282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCAAAGATGAACTCGCGGTGGCGAGCATCCTTGAGTTTGGCCTGGTCGGCTGCGGCGTCGCGGT > NC_002947/3611340‑3611486 GTTCATCTTTGGCCGCTCTGACGGCACGGACACCACCCCGTGGACCATCAAGACCGACGGCGGCTTTGGCTACAGCATGGACCCACGCCGTATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACG > 2:284967/1‑149 TTCATCTTTGGCCGCTCTGACGGCACGGACACCACCCCGTGGACCATCAAGACCGACGGCGGCTTTGGCTACAGCATGGACCCACGCCGTATCAGTTCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACG < 6:383595/148‑1 ATCTTTGGCCGCTCTGACGGCACGGACACCACCCCGTGGACCATCAAGACCGACGGCGGCTTTGGCTACAGCATGGACCCACGCCGTATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCAC > 1:189936/1‑149 CGTATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGC > 8:52985/1‑149 ATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCA > 4:8547/1‑148 TCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCACTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCA > 3:183353/1‑147 GCGGCGACGGCACTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCAAAGATGAACTCGCGGTGGCGAGCATCCTTGAGTTTGGCCTGGTCGGCTGC < 7:52985/149‑1 CTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCAAAGATGAACTCGCGGTGGCGAACATCCTTGAGTTTGGCCTGGTCGGCTGCTGCGTCGCGGT > 4:256439/1‑148 GTTCATCTTTGGCCGCTCTGACGGCACGGACACCACCCCGTGGACCATCAAGACCGACGGCGGCTTTGGCTACAGCATGGACCCACGCCGTATCAGTGCCGCACCGCAACTGGCCAACCAGTCCACCGACGGTGGTTTCAGCGGCGACGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3611434‑3611282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacTGATACGGCGTGGGTCCATGCTGTAGCCAAAGCCGCCGTCGGTCTTGATGGTCCACGGGGTGGTGTCCGTGCCGTCAGAGCGGCCAAAGATGAACTCGCGGTGGCGAGCATCCTTGAGTTTGGCCTGGTCGGCTGCGGCGTCGCGGT > NC_002947/3611340‑3611486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |