| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3918203 = | 53 (0.740) | 4 (0.060) | 4/254 | NT | 7.6% | coding (1985/3129 nt) | mexB | multidrug resistance protein MexB |
| ? | NC_002947 | 3918272 = | 47 (0.690) | coding (2054/3129 nt) | mexB | multidrug resistance protein MexB | |||||
CTTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3918355‑3918203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaTGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGTGCAACTGGAAATCGACCGCCGCCAGGCTAATGCACTG > NC_002947/3918272‑3918417 CTTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGCCTCACCGAGGCCGTCAATGGGGGGC > 4:316853/1‑149CTTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGC > 2:415527/1‑149 TTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCG > 3:268861/1‑149 TTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCG < 8:103355/149‑1 GCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGG > 2:221793/1‑147 CCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGGCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTG > 8:375922/1‑149 ATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGGCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCG > 7:131851/1‑149 AAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGGCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGT < 7:375922/149‑1 CTCACCGAGGCCGTCAATGGGGGGCGGCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGTGCAACTGGAAA < 8:131851/149‑1 GCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGTGCAACTGGAAATCGACCGCCGCCAGGCTAATGCACTG < 1:100450/149‑1 GCATGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGTGCAACTGGAAATCGACCGCCGCCAGGCTAATGCACTG < 4:162878/149‑1 CTTCGCGCACGTTGGTCAGCACCTTGCTTTTGCTGGCGCTTTCGAGCAGCTGGTCACGGGCTGCCATCAGCTCGGCGTGGCCCATGCCGCCACGGTCCTGAAGGCGAAATTCGAAACCGGTCGACTCACCGAGGCCGTCAATGGGGGGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3918355‑3918203‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcaTGGGCCACGCCGAGCTGATGGCAGCCCGTGACCAGCTGCTCGAAAGCGCCAGCAAAAGCAAGGTGCTGACCAACGTGCGCGAAGCCTCGCTGGCGGAAAGCCCGCAGGTGCAACTGGAAATCGACCGCCGCCAGGCTAATGCACTG > NC_002947/3918272‑3918417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |