New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 401461465 (0.910)5 (0.070) 5/252 NT 7.6% intergenic (+91/‑31) PP_3542/PP_3543 hypothetical protein/iron‑sulfur cluster‑binding protein
?NC_002947 = 4014630 60 (0.890)intergenic (+107/‑15) PP_3542/PP_3543 hypothetical protein/iron‑sulfur cluster‑binding protein

TGGCGGGTGCGGTGGATAGCCGCAGGCATCTGAAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4014462‑4014614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcatCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGCGCGCTGGCCTTCAGATGCCTG  <  NC_002947/4014630‑4014484
                                                                                                                                                                                                                                                                                                            
TGGCGGGTGCGGTGGATAGCCGCAGGCATCTGAAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGC                                                                                                                                                         <  6:92029/149‑1
    GGGTGCGGTGGATAGCCGCAGGCATCTGAAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCAT                                                                                                                                                     <  2:306107/149‑1
    GGGTGCGGTGGATAGCCGCAGGCATCTGAAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCAT                                                                                                                                                     <  5:291020/149‑1
                                AAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCATCAGGCCTCGATCAGGCATGAGCACTATG                                                                                                                         <  1:253980/149‑1
                                 AGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCATCAGGCCTCGATCAGGCATGAGCACTATGG                                                                                                                        <  6:63100/149‑1
                                                           TGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCATCAGGCCTCGATCAGGCATGAGCACTA                                                                                                                           >  7:163261/1‑120
                                                           TGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCATCAGGCCTCGATCAGGCATGAGCACTA                                                                                                                           <  8:163261/120‑1
                                                                                  CAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCATCAGGCCTCGATCAGGCATGAGCACT                                                                                                                            >  4:59347/1‑96
                                                                                                                                                 GTGCTCATCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGC                       <  7:307397/134‑1
                                                                                                                                                 GTGCTCATCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGC                       >  8:307397/1‑134
                                                                                                                                                    CTCATCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGCGCGCTGGCCTTCAGATGC     >  2:341552/1‑149
                                                                                                                                                       ATCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGCGCGCTGGCCTTCAGATGCCTG  >  6:160820/1‑149
                                                                                                                                                                                                                                                                                                            
TGGCGGGTGCGGTGGATAGCCGCAGGCATCTGAAGGCCAGCGCGCCAGGCTCGGTGATATGAGGCCTGCCGGGGCTATGCGGCAAATCTGATATGGTTTTTATCGTAAAATCTGAACCTGTGCTGATAACAGCTTCAGCGCCATAGTGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4014462‑4014614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcatCAGGCCTCGATCAGGCATGAGCACTATGGCGCTGAAGCTGTTATCAGCACAGGTTCAGATTTTACGATAAAAACCATATCAGATTTGCCGCATAGCCCCGGCAGGCCTCATATCACCGAGCCTGGCGCGCTGGCCTTCAGATGCCTG  <  NC_002947/4014630‑4014484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.