New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4066773 | 73 (1.020) | 4 (0.060) | 4/254 | NT | 5.5% | coding (2291/3108 nt) | mdtC | multidrug transporter membrane protein |
? | NC_002947 | = 4066800 | 69 (1.020) | coding (2264/3108 nt) | mdtC | multidrug transporter membrane protein |
GCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4066619‑4066773 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcgAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC < NC_002947/4066800‑4066653 GCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCG > 2:4613/1‑149 GGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTC < 1:55716/148‑1 GGCCTTCGGGGCGGCCCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACG < 8:296301/149‑1 CTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTG < 8:377135/149‑1 CTTCGTGGCTGACCCGGTCGTTGGCAAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTG > 5:342198/1‑149 CGTGGCTGACCCGGTCGTTGGCTAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGA < 6:342198/148‑1 GTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCA < 5:172099/149‑1 GTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGGGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCA < 3:339082/149‑1 CTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTT < 6:386078/149‑1 TCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTC > 4:8660/1‑149 CGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCG > 2:7880/1‑149 GAGATCAACCCGAAATACGCCTGGGCCCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC > 7:236908/1‑149 GCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4066619‑4066773 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcgAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC < NC_002947/4066800‑4066653 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |