| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4186181 = | 55 (0.770) | 3 (0.040) | 3/254 | NT | 5.9% | intergenic (+97/‑473) | PP_3682/PP_3683 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 4186230 = | 44 (0.650) | intergenic (+146/‑424) | PP_3682/PP_3683 | hypothetical protein/hypothetical protein | |||||
GCAGTTACCCGATCTCACGGGCCAGGTTGCAGGCATTCCTGAACGACCTAGGCTTTGAACGGTATCGGATAAGAGCCCCGTTGGCGCATGGAAATCATGACGATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4186332‑4186181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttaTCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGAGTT > NC_002947/4186230‑4186375 GCAGTTACCCGATCTCACGGGCCAGGTTGCAGGCATTCCTGAACGACCTAGGCTTTGAACGGTATCGGATAAGAGCCCCGTTGGCGCATGGAAATCATGACGATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCC < 3:366683/149‑1 CAGTTACCCGATCTCACGGGCCAGGTTGCAGGCATTCCTGAACGACCTAGGCTTTGAACGGTATCGGATAAGAGCCCCGTTGGCGCATGGAAATCATGACGATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCT < 2:70589/149‑1 TGACGATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAAAGCCCTTATCGTCATCATTTCCATGCGCCAACGGGGCTCGTATCCGCTACCGATCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAtctcc > 8:78501/1‑144 ATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGC < 7:217365/121‑1 ATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGC > 8:217365/1‑121 GCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGT < 7:221974/148‑1 CCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGA > 6:281407/1‑149 CTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGAGT < 1:399851/149‑1 ATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGAGTT < 2:71788/147‑1 ATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGAGTT < 3:184004/147‑1 GCAGTTACCCGATCTCACGGGCCAGGTTGCAGGCATTCCTGAACGACCTAGGCTTTGAACGGTATCGGATAAGAGCCCCGTTGGCGCATGGAAATCATGACGATAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4186332‑4186181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttaTCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCCTGACTTTCACAAGGTGAGTT > NC_002947/4186230‑4186375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |