New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4337054	45 (0.630)	3 (0.040)	3/256	NT	6.3%	coding (161/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337105	46 (0.670)					coding (110/885 nt)	PP_3811	LysR family transcriptional regulator

CCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGC‑CTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4336902‑4337054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGC  <  NC_002947/4337105‑4336960                                                                                                                                                                                                                                                                                                              CCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGC‑CTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGG                                                                                                                                                        >  3:296251/1‑149  CATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCGCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGG                                                                                                                                                        >  1:114334/1‑149  CATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGC‑CTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGC                                                                                                                                                       >  4:133311/1‑149  CATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGC‑CTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGC                                                                                                                                                       >  6:406653/1‑149                                                           GGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGG                                                                                               >  1:202935/1‑149                                                                   ATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTC                                                                                         <  2:202935/147‑1                                                                    TGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGAT                                                                                      <  7:390740/149‑1                                                                                                                                                      gctCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCG    <  2:216877/146‑1                                                                                                                                                        GCCTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGC  <  2:9119/149‑1                                                                                                                                                                                                                                                                                                              CCATGGCAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGC‑CTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4336902‑4337054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccTGATGCAGCTTGAGGAGCGCCTGGGCGTGCGCCTGCTCAACCGCTCCACCCGGCGCCTCGATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGC  <  NC_002947/4337105‑4336960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.