New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4526692	85 (1.190)	5 (0.070)	3/258	NT	5.8%	coding (502/627 nt)	PP_4015	HflD‑like high frequency lysogenization protein
	?	NC_002947	= 4526735	81 (1.170)					coding (545/627 nt)	PP_4015	HflD‑like high frequency lysogenization protein

CGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4526544‑4526692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTC  <  NC_002947/4526735‑4526588                                                                                                                                                                                                                                                                                                            CGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCC                                                                                                                                                      <  6:239226/149‑1                                               GCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAACTGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGG                                                                                                         <  1:348365/149‑1                                                          GGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTC                                                                                             >  5:12877/1‑149                                                          GGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTC                                                                                             >  5:19013/1‑149                                                            ACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGA                                                                                           <  6:12877/149‑1                                                             CACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGA                                                                                           <  6:19013/148‑1                                                                                                                                                   GCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGCGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGG     >  6:263573/1‑149                                                                                                                                                   GCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGG     <  8:182791/149‑1                                                                                                                                                    CCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGC    <  5:371475/149‑1                                                                                                                                                      CAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTC  >  4:338572/1‑149                                                                                                                                                                                                                                                                                                            CGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAA‑TGCCTCGAAGATCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4526544‑4526692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTC  <  NC_002947/4526735‑4526588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.