| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4609857 | 57 (0.800) | 4 (0.060) | 4/248 | NT | 7.2% | coding (344/876 nt) | PP_4081 | type IV/VI secretion system protein |
| ? | NC_002947 | = 4609877 | 51 (0.770) | coding (364/876 nt) | PP_4081 | type IV/VI secretion system protein | |||||
AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4609703‑4609857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgccagcaACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAG < NC_002947/4609877‑4609734 AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATAC > 3:66516/1‑148AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATAC < 4:379040/148‑1AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATAC < 4:66516/148‑1 GGGGTTGCTGCGCCAATCTCATGCTGGATGCTGCGGCAACCTTGTTCGGTCTTGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACG < 4:18467/148‑1 GGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGC < 5:234225/149‑1 GGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGC > 1:256368/1‑148 GGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGC > 7:243165/1‑148 GGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCA < 7:339455/149‑1 GTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAG > 2:32014/1‑149 TCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCT > 4:176841/1‑148 CCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTT < 3:176841/149‑1 GTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATG < 5:15383/145‑1 GTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATG > 6:15383/1‑145 CGCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCC < 3:370024/148‑1 GCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGTGTGCCGC > 8:397062/1‑149 GCCAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCG > 4:419127/1‑148 CAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAG > 6:143438/1‑149 CAGCAACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAG > 4:195578/1‑149 AGGGGTGGCTGCGCCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4609703‑4609857‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgccagcaACTGAGCGGGCTCATAGCCGTGCTGGCGTATTTCTTCCCGGATGCTGTCGATCTGAATACGCACTTGCTGATGCACATCTTTGATGTTGGGCAGTTCATCGAGCGTGCGCAGGCGCATTACCAGCCCGAACAAGGGTGCCGCAG < NC_002947/4609877‑4609734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |