New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4642108 =	52 (0.730)	6 (0.090)	6/256	NT	10.4%	coding (51/897 nt)	PP_4107	LysR family transcriptional regulator
	?	NC_002947	4642142 =	54 (0.790)					coding (85/897 nt)	PP_4107	LysR family transcriptional regulator

CGCCGGCCGGGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4642259‑4642108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATCC  >  NC_002947/4642142‑4642289                                                                                                                                                                                                                                                                                                              CGCCGGCCGGGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCG                                                                                                                                                         <  7:278209/149‑1    CGGCCGGGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCC                                                                                                                                                      >  8:192315/1‑149          GGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCG                                                                                                                                                         >  3:15421/1‑140          GGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCG                                                                                                                                                         >  3:21348/1‑140          GGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCG                                                                                                                                                         <  4:15421/140‑1          GGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCG                                                                                                                                                         <  4:21348/140‑1                                                                                                                     TGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCAC                                                <  3:57711/138‑1                                                                                                                     TGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCAC                                                >  4:57711/1‑138                                                                                                                       GGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCG                                   >  3:228719/1‑149                                                                                                                        GCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCCCTCGCGGT                                                                          >  7:37680/1‑109                                                                                                                        GCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGT                                                                          <  8:37680/109‑1                                                                                                                         CCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGC                                 >  2:153003/1‑149                                                                                                                                                      GCCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGAT    <  8:24069/149‑1                                                                                                                                                       CCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATC   <  2:227785/149‑1                                                                                                                                                       CCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATC   <  8:278209/149‑1                                                                                                                                                       CCCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATC   <  8:344933/149‑1                                                                                                                                                        CCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATCC  >  3:396466/1‑149                                                                                                                                                                                                                                                                                                              CGCCGGCCGGGGTCAGGTGCAGGCGCCGGCGAATGCGCTGGAACAGCGAGTGCGAGAGCATGTCCTCAAGCTGCGCGACCTGCTTGCTGACGGCGCTCTGGGTCAGGTGCAGTTCCTGGGCCGCGCGGGTGAAGCTGAGGTGGCGAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4642259‑4642108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccCAGGAACTGCACCTGACCCAGAGCGCCGTCAGCAAGCAGGTCGCGCAGCTTGAGGACATGCTCTCGCACTCGCTGTTCCAGCGCATTCGCCGGCGCCTGCACCTGACCCCGGCCGGCGCGCTGTACCTCACCGAAGTGAACAAGATCC  >  NC_002947/4642142‑4642289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.