New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5104994 =	69 (0.960)	5 (0.080)	5/248	NT	7.1%	intergenic (+17/+97)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase
	?	NC_002947	5105059 =	68 (1.030)					intergenic (+82/+32)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase

ATGACCGAGCGGAAGATGCGTCACCCGCTTGAGGTGGTGTTGCAGTACGCTCAGCGCTGAGGTTCAGGGCCTTTGGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5105150‑5104994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTTGCCAGCGGCTCCCCGTCCTTGT  >  NC_002947/5105059‑5105206                                                                                                                                                                                                                                                                                                                   ATGACCGAGCGGAAGATGCGTCACCCGCTTGAGGTGGTGTTGCAGTACGCTCAGCGCTGAGGTTCAGGGCCTTTGGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTAC                                                                                                                                                              >  6:18264/1‑149    acgGAGCGGAAGATGCGTCACCCGCTTGAGGTGGGGTTGCAGTACGCTCAGCGCGGAGGTTCAGGGCCTTTGGGGGCGGCGTTGCAGCCCTGCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCC                                                                                                                                                            <  2:69773/145‑1     CCGAGCGGAAGATGCGTCACCCGCTTGAGGTGGTGTTGCAGTACGCTCAGCGCTGAGGTTCAGGGCCTTTGGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGC                                                                                                                                                          >  4:37345/1‑149                                                                                               TCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAGGGCCGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTC                                                                >  2:114693/1‑149                                                                                                 GCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGG                                                              >  5:171145/1‑149                                                                                                  CGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGT                                                             >  3:284687/1‑149                                                                                                                    CGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGG                                             <  4:284687/147‑1                                                                                                                      GGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTAC                                         <  6:171145/149‑1                                                                                                                                                    ACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTTGCCAGCGGCTCC            <  5:8859/148‑1                                                                                                                                                             GGGCTGCTTTGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTTGCCAGCGGCTCCCCGTCCTTGT  >  6:258980/1‑149                                                                                                                                                                                                                                                                                                                   ATGACCGAGCGGAAGATGCGTCACCCGCTTGAGGTGGTGTTGCAGTACGCTCAGCGCTGAGGTTCAGGGCCTTTGGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATCGTGCACGCCAGGGGGGCGGGGTTACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5105150‑5104994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTTGCCAGCGGCTCCCCGTCCTTGT  >  NC_002947/5105059‑5105206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.