New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5315015	78 (1.090)	6 (0.090)	6/244	NT	7.4%	intergenic (‑2/+66)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 5315042	79 (1.210)					intergenic (‑29/+39)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

GCGCCGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5314857‑5315015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctccatagTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  NC_002947/5315042‑5314902                                                                                                                                                                                                                                                                                                              GCGCCGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAA                                                                                                                                                          <  4:148513/148‑1    CCGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGC                                                                                                                                                      <  2:137142/149‑1     CGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCT                                                                                                                                                     >  2:162401/1‑149        GCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCA                                                                                                                                                  <  3:310145/149‑1                                        AGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCT                                                                                                                  <  8:87100/149‑1                                                AATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCC                                                                                                          <  4:174738/149‑1                                                 cgaatctACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCG                                                                                                         <  3:92736/142‑1                                                        ACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCG                                                                                                                              <  7:252987/121‑1                                                        ACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCG                                                                                                                              >  8:252987/1‑121                                                         CCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCG                                                                                                         >  4:92736/1‑141                                                                                                                                                    ACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCA      >  8:178452/1‑149                                                                                                                                                      GGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATT    <  3:336310/149‑1                                                                                                                                                        CTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  2:283561/149‑1                                                                                                                                                            ATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACC                     >  4:29331/1‑126                                                                                                                                                                                                                                                                                                              GCGCCGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5314857‑5315015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctccatagTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  NC_002947/5315042‑5314902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.