New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5409285 =	63 (0.880)	4 (0.060)	3/254	NT	6.2%	coding (1591/2037 nt)	stcD	N‑methylproline demethylase
	?	NC_002947	5409332 =	61 (0.900)					coding (1544/2037 nt)	stcD	N‑methylproline demethylase

ATGCCGCACACCGAAGTGCTGGAGCACGGCAATCAGTTTCTGGTTTCAAGCTGGGACATCATTTCTGGCGACGTGAAGCCTGGGCGCAATGTGCTGGTGTACGACGATGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5409438‑5409285 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcaTCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  >  NC_002947/5409332‑5409477                                                                                                                                                                                                                                                                                                              ATGCCGCACACCGAAGTGCTGGAGCACGGCAATCAGTTTCTGGTTTCAAGCTGGGACATCATTTCTGGCGACGTGAAGCCTGGGCGCAATGTGCTGGTGTACGACGATGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGC                                                                                                                                                         <  4:98715/149‑1    CCGCACACCGAAGTGCTGGAGCACGGCAATCAGTTTCTGGTTTCAAGCTGGGACATCATTTCTGGCGACGTGAAGCCTGGGCGCAATGTGCTGGTGTACGACGATGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCC                                                                                                                                                       <  3:146939/148‑1      GCACACCGAAGTGCTGGAGCACGGCAATCAGTTTCTGGTTTCAAGCTGGGACATCATTTCTGGCGACGTGAAGCCTGGGCGCAATGTGCTGGTGTACGACGATGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCG                                                                                                                                                      >  1:139059/1‑147                                                                                                            TGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCGCATCGTCGTAAACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGC                                              >  1:336348/1‑149                                                                                                            TGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCACGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCATCTTGAAACCAGAAACTCATTCCCGTGCTCCAGCTCTTCGGTGatc                                              >  8:152186/1‑146                                                                                                                   GACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGC                                       >  3:269283/1‑149                                                                                                                      CACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCC                                    <  4:269283/149‑1                                                                                                                                                      CCGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCA    >  2:180496/1‑149                                                                                                                                                      CCGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCA    >  5:403475/1‑149                                                                                                                                                       CGCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCAT   <  8:87019/149‑1                                                                                                                                                        GCATCGTCGTACACCAGCACATTGTGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  <  2:97095/149‑1                                                                                                                                                        GCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  <  1:103943/149‑1                                                                                                                                                        GCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  <  5:339165/149‑1                                                                                                                                                        GCATCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  <  8:14522/149‑1                                                                                                                                                                                                                                                                                                              ATGCCGCACACCGAAGTGCTGGAGCACGGCAATCAGTTTCTGGTTTCAAGCTGGGACATCATTTCTGGCGACGTGAAGCCTGGGCGCAATGTGCTGGTGTACGACGATGCGGGCGACCACGCCGGCCTGCAAGCCGCAGAATTCATAGCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5409438‑5409285 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcaTCGTCGTACACCAGCACATTGCGCCCAGGCTTCACGTCGCCAGAAATGATGTCCCAGCTTGAAACCAGAAACTGATTGCCGTGCTCCAGCACTTCGGTGTGCGGCATGCCCCCAGTCGCCACGATCACCACGTCGGCATTTTCATC  >  NC_002947/5409332‑5409477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.