New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5692546	81 (1.130)	5 (0.070)	5/260	NT	5.9%	intergenic (+15/‑155)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692640	82 (1.180)					intergenic (+109/‑61)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

ATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5692481‑5692546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCA  <  NC_002947/5692640‑5692493                                                                                                                                                                                                                         ATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCC                                                                   <  1:78962/149‑1                        CCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGG                                                                                >  1:287399/1‑113                        CCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGG                                                                                <  2:287399/113‑1                               GACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC                                                                         <  1:52409/113‑1                               GACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC                                                                         >  2:52409/1‑113                                                                 CCAGCCCCTTCGGGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCC   <  3:85453/149‑1                                                                 CCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGC    >  1:272344/1‑148                                                                  CAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCC   >  1:302812/1‑149                                                                  CAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGCAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGC    >  6:35735/1‑147                                                                  CAGCCCCTCCGCGGGCATGCCCGCTCCCGCCCATACCCCACA‑GGCTTCCGCGCCGGTGAGAAACCCGTGGCAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCA  <  8:66410/149‑1                                                                                                                                                                                                                         ATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5692481‑5692546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACA‑GGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCA  <  NC_002947/5692640‑5692493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.