New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5855296 =	66 (0.920)	4 (0.060)	4/258	NT	6.6%	coding (1316/1392 nt)	tcyP	sodium/cystine symporter
	?	NC_002947	5855345 =	50 (0.730)					coding (1365/1392 nt)	tcyP	sodium/cystine symporter

CGCAGGGTGTTCAGGTTTTGAGCAAGACACGAGCGGCCTTGTCGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5855447‑5855296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGA  >  NC_002947/5855345‑5855492                                                                                                                                                                                                                                                                                                              CGCAGGGTGTTCAGGTTTTGAGCAAGACACGAGCGGCCTTGTCGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGG                                                                                                                                                         <  5:7383/149‑1    AGGGTGTTCAGGTTTTGAGCAAGACACGAGCGGCCTTGTCGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGA                                                                                                                                                      <  6:102085/149‑1                                           CGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGT                                                                                                                                                        >  1:374673/1‑108                                           CGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGT                                                                                                                                                        <  2:374673/108‑1                                                                                                         CACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTAGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTG                                                 >  1:113477/1‑149                                                                                                          ACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGC                                                >  4:198594/1‑149                                                                                                           CCGCCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGCCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCG                                               >  6:315760/1‑149                                                                                                                                            AGCTGGCTGGTGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGG              <  3:198594/149‑1                                                                                                                                                     ggtATGAACATGCCGAGCTCCGCCACACCTGACAGATCGCCGGGGCGAATTGCGCCCCTTCCGCCACAAGGCCGCGCGTGTCTTGCTCAAAACCTCAACACCCTCCG‑CCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA    <  5:42229/146‑1                                                                                                                                                      TGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA    <  3:291437/149‑1                                                                                                                                                      TGATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCA    <  4:430158/149‑1                                                                                                                                                        ATGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGA  <  8:62172/149‑1                                                                                                                                                                                                                                                                                                              CGCAGGGTGTTCAGGTTTTGAGCAAGACACGAGCGGCCTTGTCGCGAAAGGGGCGCAATGCGCCCCGGCGATCTGTCAGGTGTGGCTCAGCTCGGCATGTTCATCACCGGCCAGCACTTCCTTGTCAGTCTCTTTCAACAGCTGGCTGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5855447‑5855296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgaTGAACATGCCGAGCTGAGCCACACCTGACAGATCGCCGGGGCGCATTGCGCCCCTTTCGCGACAAGGCCGCTCGTGTCTTGCTCAAAACCTGAACACCCTGCGCCCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGA  >  NC_002947/5855345‑5855492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.