New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	533510 =	NA (NA)	4 (0.060)	3/242	NT	7.9%	coding (775/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533506	52 (0.730)					coding (771/1194 nt)	tufA	elongation factor Tu‑A

ATCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACG  >  NC_002947/533363‑533603                                                                                                                                                    |                                                                                              aTCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTg                                                                                              >  7:58801/1‑149 (MQ=32)  tCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTg                                                                                              >  6:175540/1‑148 (MQ=32)  tCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACAGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTg                                                                                              >  6:355904/1‑148 (MQ=17)           cGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGTCACCACCACCACCACCTGCACCGGTGtt                                                                                    <  1:246775/149‑1 (MQ=17)                cTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGAt                                                                               >  5:100496/1‑149 (MQ=32)                cTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGAt                                                                               >  3:17357/1‑149 (MQ=32)                 tGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATg                                                                              >  3:423694/1‑149 (MQ=32)                    tGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTc                                                                           <  2:177635/149‑1 (MQ=32)                       cGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCg                                                                         >  8:161478/1‑148 (MQ=32)                        gATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGc                                                                        >  6:276729/1‑148 (MQ=32)                           cGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgc                                                                    >  5:39892/1‑149 (MQ=32)                            gAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAgc                                                                    <  3:99227/148‑1 (MQ=32)                                aCGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCTCGTTCAGGATCCGCTGGAAATCGTTTGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGctgctg                                                               <  8:383698/149‑1 (MQ=17)                                  gtgtTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGa                                                             >  1:361418/1‑149 (MQ=32)                                  gtgtTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGa                                                             >  2:415409/1‑149 (MQ=32)                                  gtgtTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGa                                                             <  4:17357/149‑1 (MQ=32)                                      tctcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACg                                                           >  4:79345/1‑147 (MQ=32)                                       ctcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAg                                                        >  6:33117/1‑149 (MQ=32)                                       ctcGATCTCGGGGCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCCCCGGGGTGGAGAGGTTCCGCAAGCGGCTGGACGAAg                                                        >  8:302125/1‑149 (MQ=11)                                        tcGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAgg                                                       >  2:48866/1‑149 (MQ=32)                                          gATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTGAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCCCCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTc                                                     >  7:195147/1‑149 (MQ=17)                                          gATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAg                                                        <  8:58801/146‑1 (MQ=32)                                           aTCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCTAGCGTGGCATAGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTATGCGTGACACCCCCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCg                                                    >  4:70696/1‑149 (MQ=255)                                               cGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCt                                                >  2:238993/1‑149 (MQ=32)                                                gggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTc                                                     <  1:48866/143‑1 (MQ=32)                                                 ggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGCCACCACCACCACCACCTGCCCCGgtgg                                                                                     >  8:308903/1‑109 (MQ=12)                                                 ggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTgg                                              <  4:202329/149‑1 (MQ=32)                                                 ggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTgg                                              <  6:283609/149‑1 (MQ=32)                                                  gTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGc                                             <  2:191000/149‑1 (MQ=32)                                                      tGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCgag                                          >  1:292525/1‑148 (MQ=32)                                                        gTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGaa                                        <  6:100496/148‑1 (MQ=32)                                                           ccGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgc                                    >  3:418531/1‑149 (MQ=32)                                                           ccGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTACTGGCGAGAACTgc                                    >  1:266155/1‑149 (MQ=17)                                                            cGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcg                                   <  7:160854/149‑1 (MQ=32)                                                             gttgttACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcgg                                  >  3:121238/1‑149 (MQ=32)                                                              ttgttACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcggc                                 <  4:423694/149‑1 (MQ=32)                                                                  tACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTc                             >  2:49208/1‑149 (MQ=32)                                                                   aCCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTc                             <  1:191149/148‑1 (MQ=32)                                                                    ccGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTct                            <  5:33117/148‑1 (MQ=32)                                                                     cGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACTCCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgc                          >  7:173776/1‑149 (MQ=17)                                                                     cGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgc                          >  1:228264/1‑149 (MQ=32)                                                                     cGGTCGTATCGAGCGTGGCATCGTCAGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCAACAAATGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgc                          >  6:209099/1‑149 (MQ=255)                                                                       gTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgctg                        >  8:285419/1‑149 (MQ=32)                                                                           tATCTAGCGTGGCATCGTCCGCGTTAATGTTCCTCTTGAAATCGTTGGTCTGCTTGACACCACCACCACCACCTGCACCGGTGTTGATATGTTCCGCAAGCTGCTTGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGtt                    <  2:151374/149‑2 (MQ=11)                                                                           tATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTg                    <  7:128517/149‑1 (MQ=32)                                                                             tCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGt                  <  7:285419/149‑1 (MQ=32)                                                                               gAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTAc                >  2:148650/1‑149 (MQ=32)                                                                                    tGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGc           <  2:292525/149‑1 (MQ=32)                                                                                      gCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGt         <  2:361418/149‑1 (MQ=32)                                                                                       cATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCCCCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGt         >  4:174715/1‑148 (MQ=17)                                                                                       cATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGt         >  7:85848/1‑148 (MQ=32)                                                                                         tCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTgac      <  8:85848/149‑1 (MQ=32)                                                                                            tCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTg                                               <  7:83325/105‑1 (MQ=31)                                                                                            tCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTg                                               >  8:83325/1‑105 (MQ=31)                                                                                             ccGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGacgacg  >  6:328855/1‑149 (MQ=11)                                                                                                                                                    |                                                                                              ATCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGACGACG  >  NC_002947/533363‑533603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.