New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	610922 =	NA (NA)	3 (0.050)	3/248	NT	NA	intergenic (‑77/‑182)	PP_0525/PP_0526	B12 family TonB‑dependent receptor/transposase
	?	NC_002947	610993 =	NA (NA)					intergenic (‑148/‑111)	PP_0525/PP_0526	B12 family TonB‑dependent receptor/transposase

AGGGTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGC  >  NC_002947/610774‑611021                                                                                                                                                       |                                                                                                    aGGGTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGgga                                                                                                     <  6:305072/149‑1 (MQ=255) aGGGTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGgga                                                                                                     <  2:25877/149‑1 (MQ=255)  gggTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGggag                                                                                                    <  4:189592/149‑1 (MQ=255)   ggTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGggagg                                                                                                   <  8:267567/149‑1 (MQ=255)    gTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGggagga                                                                                                  <  7:346693/149‑1 (MQ=255)         cacaGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGaggaggagg                                                                                             >  2:410709/1‑149 (MQ=255)         cacaGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGaggaggagg                                                                                             <  3:196905/149‑1 (MQ=255)              cACTGTGCTGTCCCCTTATGAGCGGGTTTACCCGCGAAAGGGCAGGGCCTGCTGGCCATTTCTCACCAGTCTATCACCGTTTCAGCCGCTACCGTATTCGCGTGT‑‑AAACCCTCTTGTATGGTAGGACTTGAAGGGAGGAGGACGGCCAt                                                                                        <  5:115634/149‑1 (MQ=21)              cACTGGGCCTTCCCCGTAGGAGCGTGTTTACCCGCGAAAGGGGCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCAt                                                                                        <  6:143988/149‑1 (MQ=18)               aCTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATa                                                                                       <  1:172867/149‑1 (MQ=255)                   tgCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACt                                                                                    <  8:91759/148‑1 (MQ=255)                          cccGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTg                                                                            <  1:279404/149‑1 (MQ=255)                           ccGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTTCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTATGACTTGAAGGGAGGAGGATGGCCATAACTCGCTTCTGa                                                                           <  7:111767/149‑1 (MQ=255)                           ccGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa                                                                           <  3:96165/149‑1 (MQ=255)                            cGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGAc                                                                          <  2:380822/149‑1 (MQ=255)                                 gAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTc                                                                     <  2:45018/149‑1 (MQ=255)                                  aGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcg                                                                    <  1:163625/149‑1 (MQ=255)                                     gggTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcgcg                                                                  >  5:109901/1‑148 (MQ=255)                                      ggTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcgcg                                                                  >  5:53024/1‑147 (MQ=255)                                           aCCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTAGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACa                                                           >  2:193194/1‑149 (MQ=255)                                            cccGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTa                                                             >  4:9615/1‑146 (MQ=255)                                            cccGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACa                                                           <  7:331167/148‑1 (MQ=255)                                                cgAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCg                                                      >  4:210254/1‑149 (MQ=255)                                                  aaaGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACa                                                           >  6:202590/1‑142 (MQ=255)                                                  aaaGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACa                                                           <  5:202590/142‑1 (MQ=255)                                                   aaGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAg                                                   <  7:291142/149‑1 (MQ=255)                                                     gggccgggccTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAg                                                   >  3:22340/1‑147 (MQ=255)                                                         cgggccTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAGAAACCCGGTTGTTTGTTAGCAGTTGAAGGGAGGAGTAGGGCCATAAAACGGTAGTGAATTTTCGCGAAGTAAAGCCCGAAGtag                                                >  1:130821/1‑148 (MQ=16)                                                            gccTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCa                                          >  7:224720/1‑149 (MQ=255)                                                             ccTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAc                                         <  1:410709/149‑1 (MQ=255)                                                                 ctgGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcct                                     >  5:277513/1‑149 (MQ=255)                                                                  tgGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcgcg                                                                  <  1:135492/119‑1 (MQ=255)                                                                  tgGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTcgcg                                                                  >  2:135492/1‑119 (MQ=255)                                                                       aTTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcctcctcct                               <  7:328026/149‑1 (MQ=255)                                                                       aTTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcatcctcct                               >  3:25102/1‑149 (MQ=255)                                                                       aTTTCTCACCAGTCGTTCACCGTTGCCGCCGCTAACGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcctcctcct                               >  1:25099/1‑149 (MQ=255)                                                                              aCCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAaca                        <  6:109901/149‑1 (MQ=255)                                                                              aCCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCATCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAaca                        >  4:34198/1‑149 (MQ=255)                                                                                cAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa                          >  1:368018/1‑145 (MQ=40)                                                                                cAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa                          <  2:368018/145‑1 (MQ=40)                                                                                   tCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAccc                     >  1:258440/1‑147 (MQ=38)                                                                                     gTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGt                                                     >  6:331297/1‑113 (MQ=39)                                                                                     gTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGt                                                     <  5:331297/113‑1 (MQ=39)                                                                                         aCCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCg             <  6:277513/149‑1 (MQ=35)                                                                                            gTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAAACCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGAt           >  6:180546/1‑148 (MQ=21)                                                                                               gccgccGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAg                                                   <  4:178506/105‑1 (MQ=35)                                                                                               gccgccGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAg                                                   <  4:185207/105‑1 (MQ=35)                                                                                                 cgccgcTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGaa     <  3:34198/149‑1 (MQ=34)                                                                                                    cgcTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGc  <  3:9615/149‑1 (MQ=32)                                                                                                                                                       |                                                                                                    AGGGTTTCCACAGCACTGTGCTGTCCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCATTTCTCACCAGTCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGT‑‑AAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGC  >  NC_002947/610774‑611021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.