| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1499458 | 23 (0.320) | 10 (0.140) | 8/264 | NT | 30.9% | intergenic (+35/‑129) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499495 | 22 (0.310) | intergenic (+72/‑92) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
GCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAC > NC_002947/1499311‑1499602 | gCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGaaa < 1:222942/149‑1 (MQ=255)gCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGaaa > 2:222942/1‑149 (MQ=255) tgtgGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAg > 3:269073/1‑149 (MQ=255) gtgGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAg‑g > 6:200079/1‑149 (MQ=255) gAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCAt < 5:200079/149‑1 (MQ=255) gAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCAt > 2:133490/1‑149 (MQ=255) aGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATg < 8:95203/149‑1 (MQ=255) cAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccat > 5:82710‑M1/1‑128 (MQ=255) tGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATgg > 1:282965/1‑143 (MQ=255) tGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATgg < 2:282965/143‑1 (MQ=255) gACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCttt < 1:154144/149‑1 (MQ=255) gggCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGcc < 6:14720/149‑1 (MQ=255) ggCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCg < 4:269073/149‑1 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCgg < 3:307516/149‑1 (MQ=255) ccGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGgt < 7:107878/149‑1 (MQ=255) aGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttc < 5:416466‑M1/149‑41 (MQ=255) ttCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagncggtgccatgcaccgcggcgcctgtttcgc < 1:41886‑M1/149‑43 (MQ=255) gACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgg > 1:253004‑M2/1‑141 (MQ=255) aCAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAAGCATTGGCCCCACAGCAGGACTGAGGCTGCCAACCGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGCCACCGGCTTTGCCgg > 1:82984/1‑139 (MQ=37) aCAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCgg < 2:82984/138‑1 (MQ=255) aCAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggc > 2:341440‑M2/1‑140 (MQ=255) aCAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggc > 1:133490‑M2/1‑140 (MQ=255) tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGgt > 8:182541/1‑132 (MQ=255) tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGgt < 7:182541/132‑1 (MQ=255) aaGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgc < 6:82710‑M1/148‑55 (MQ=255) gTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcggg < 6:244885‑M1/133‑46 (MQ=255) gCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCAt < 8:230765/101‑1 (MQ=255) gCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCAt > 7:230765/1‑101 (MQ=255) cAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTg < 4:313380/89‑1 (MQ=255) cAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTg > 3:313380/1‑89 (MQ=255) cTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcggg > 4:127771‑M2/1‑105 (MQ=255) cTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcggg < 3:127771‑M2/113‑9 (MQ=255) cagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGAGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgccc > 1:103078‑M2/1‑82 (MQ=255) gCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggctt < 6:82710‑M2/148‑95 (MQ=255) cGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt > 2:279639/1‑148 (MQ=25) gggCGTGCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgctctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctg > 1:103078‑M1/1‑15 (MQ=255) ggCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa > 8:69406/1‑148 (MQ=25) ggCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc > 1:291652/1‑149 (MQ=25) gTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc > 4:326100/1‑149 (MQ=25) gCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgt > 2:341440‑M1/1‑9 (MQ=255) gCCCGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgt > 1:133490‑M1/1‑9 (MQ=255) gCCCGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACGCCCt > 8:214760/1‑149 (MQ=37) cccGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcag < 3:127771‑M1/113‑106 (MQ=255) cccGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcag > 4:127771‑M1/1‑8 (MQ=255) cccGCGAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcac < 6:244885‑M2/133‑89 (MQ=255) ccGCGAAcaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtc > 1:253004‑M1/1‑7 (MQ=255) gcgAAACAG‑GCGCCGCGGTGCATGGCACCGNCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtcgaa < 1:41886‑M2/149‑108 (MQ=255) gcgAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTTCCTCGCTAACGAATCATGACTCCCTTAg > 8:77899/1‑148 (MQ=37) gAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtcgaact < 5:416466‑M2/149‑110 (MQ=255) gAAACAG‑GCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAc > 6:418441/1‑149 (MQ=37) | GCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACG‑AAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAG‑GCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAC > NC_002947/1499311‑1499602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |