| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2087744 | 45 (0.630) | 3 (0.040) | 3/256 | NT | 5.9% | intergenic (+557/+361) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| ? | NC_002947 | 4022795 = | 52 (0.760) | intergenic (‑490/+178) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease | |||||
GCTCTTGCTTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGA > NC_002947/2087597‑2087892 | gctcttgctTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGcgcg > 4:231598/1‑149 (MQ=32) ctcttgctTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCgg > 7:220853/1‑149 (MQ=32) tcttgctTTGGCTTTTGCTTCTAAGCAGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCgg > 1:5503/1‑149 (MQ=17) tcttgctTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGt > 4:140359/1‑149 (MQ=32) gctTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcc < 3:240126/147‑1 (MQ=32) gctTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCAGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcctc > 2:103176/1‑149 (MQ=17) gCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg > 8:194276/1‑148 (MQ=32) gCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg < 7:194276/148‑1 (MQ=32) gCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCAGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa < 1:103176/149‑1 (MQ=17) ttttGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGACGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAg > 2:352781/1‑148 (MQ=17) ttCTAAGC‑GCGCGGTAGTTCAGGCGCCGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa < 3:263096/141‑1 (MQ=17) ttCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa > 4:263096/1‑141 (MQ=32) ttCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc > 5:8441/1‑149 (MQ=32) ttCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc > 8:209175/1‑149 (MQ=32) aGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGa < 4:56500/147‑1 (MQ=32) aGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGt < 6:123509/149‑1 (MQ=32) aGC‑GCGCGGTAGTGCAGGCGCCGCAGATTGCGACTGCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGa < 1:173176/147‑1 (MQ=12) gcgcgGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAg > 1:270880/1‑149 (MQ=32) gcgGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAggg < 4:295021/149‑1 (MQ=32) ggTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGa < 8:220853/149‑1 (MQ=32) aGGCGACGCAGATTGCGACTTCAGGCGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGa < 1:99095/148‑1 (MQ=17) aGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGag > 4:201921/1‑149 (MQ=32) gCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcg > 2:84172/1‑149 (MQ=32) cgccGCATATTGCGTCTTCCTGCGGCCGAGCGGAGGGGTTGCGGTGGGTTGGGGTTGGGCTTGTTTTGGTGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcg < 1:360115/146‑1 (MQ=2) cGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCAGGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgtagc < 5:341916/149‑1 (MQ=11) gtggCCGAGGGCAGGGCTTGGGGAGGG‑CGGGGACGGGCATGGCCGCCTGTCAAGCGCGGGGCCCCAGGAGGGGGCCGGCAGTGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATgg < 1:352781/147‑1 (MQ=11) gaggCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATgg < 8:224919/149‑1 (MQ=32) gaggCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATgg > 4:272829/1‑149 (MQ=32) cGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCGGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGcc < 5:90451/149‑1 (MQ=17) aGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCT‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGAc > 4:112972/1‑149 (MQ=17) aGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGtt > 1:396282/1‑149 (MQ=33) gggCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGGGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGttt < 2:5503/149‑1 (MQ=21) gCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTg > 7:129420/1‑149 (MQ=34) ttGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGTAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGt < 3:140359/149‑1 (MQ=21) ttGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGt > 2:336443/1‑149 (MQ=34) aggg‑tggTGACGGGCATGGAGGCCGGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGGGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACttt < 5:141061/149‑1 (MQ=255) ggg‑tggTGACGGGCATGGTGGCCCGTCAAGCGCTGGGCCCCAGGTGGGGGCCGGCAGCGCGGTCCTCCCGGTAGCATGCCCGGTGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTg < 3:231598/149‑1 (MQ=11) gcttGACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATggg < 1:92539/120‑1 (MQ=12) gcttGACGGGCATCCATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATggg > 2:92539/4‑123 (MQ=12) gggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGAcc > 8:53294/1‑148 (MQ=34) gggCATGGATGCACGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGAcc > 3:130870/1‑148 (MQ=21) aTGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCAGCAGCCCGGTCCTCCCCGGACCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCCTAGGGGCCGGATGAAGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAg > 1:53805/1‑148 (MQ=11) attgccGTCAAGGGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAAcc < 4:58453/145‑1 (MQ=21) cccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGa < 2:44732/135‑1 (MQ=34) cccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGa > 1:44732/1‑135 (MQ=34) ccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCttgacgggcatccatgtccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcacttagaagcaaaagcaaaa > 7:161113‑M1/1‑38 (MQ=255) ccGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCttgacgggcatccatgtccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcacttagaagcaaaagcaaaa < 8:161113‑M1/147‑110 (MQ=255) gTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg > 5:110264/1‑148 (MQ=34) tGGGCCCCAGGATGGGGCCT‑‑AGCGCttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagc > 5:398638‑M1/1‑25 (MQ=255) ccccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAgg > 7:54642/1‑149 (MQ=34) cccAGGATGGGGCCTGCTGCGGGGTCCTCCGGGGAGCAAGCCCGGAGTGAGGGGACCGCGGAGGGTTGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGt < 2:53805/149‑1 (MQ=11) cAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTg > 1:370532/1‑148 (MQ=34) gCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGcc > 7:47275/1‑149 (MQ=34) gcgcttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagcgagagcgagagcgagagc < 7:290770‑M1/145‑142 (MQ=255) gcgcttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagcgagagcgagagcgagagc > 8:290770‑M1/1‑4 (MQ=255) gcttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagcgagagcgagagcgagagcgagagc < 2:53907‑M1/149‑148 (MQ=255) gcttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagcgagagcgagagcgagagcgagagc < 6:136319‑M1/149‑148 (MQ=255) cgGTCCTCCGGGCAGCACCCCGGGTGTGAGGGCCCCCCGTAGCTTTGCGTAGGGGCCGTATGATGGGAGCCGAGGTTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGtga < 4:130870/149‑1 (MQ=11) | GCTCTTGCTTTGGCTTTTGCTTCTAAGC‑GCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGG‑AGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGA > NC_002947/2087597‑2087892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |