New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3039329	41 (0.570)	4 (0.060)	4/254	NT	9.8%	coding (414/1344 nt)	PP_2651	MFS transporter
	?	NC_002947	= 3039372	35 (0.520)					coding (457/1344 nt)	PP_2651	MFS transporter

ACCGCCTGGGCAGCAAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTGGGGCTGGCGCGGCATGTTCATCG  >  NC_002947/3039181‑3039477                                                                                                                                                      |                                                                                                                                                     aCCGCCTGGGCAGCAAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCG                                                                                                                                                      >  7:339968‑M1/1‑149 (MQ=255)         ggCAGCAAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAg                                                                                                                                                <  6:243208/147‑1 (MQ=255)         ggCAGCAAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGgc                                                                                                                                              >  3:138902/1‑149 (MQ=255)            agcaAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCt                                                                                                                                           >  1:406371/1‑149 (MQ=255)              caAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGtcccccgcttctc                                                                                                                                         >  4:266911‑M1/1‑136 (MQ=255)              caAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTgg                                                                                                                                         <  8:339968/149‑1 (MQ=255)                   tttCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAg                                                                                                                                    <  3:109639/149‑1 (MQ=255)                            gggCTGCGCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGTGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGTCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAg                                                                                                                           <  4:31155/149‑1 (MQ=255)                              gcggcCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGc                                                                                                                         <  4:217010/149‑1 (MQ=255)                               cggcCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGcc                                                                                                                        <  4:300752/149‑1 (MQ=255)                                ggcCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCg                                                                                                                       <  2:164954/149‑1 (MQ=255)                                 gcCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTTGTTCTGCATTCATCGGGCTCAGGGTGGTGATGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGcc                                                                                                                        >  1:331722/1‑148 (MQ=255)                                  cccTGCTGGGCTGGTCGGTGGGACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCgag                                                                                                                     <  1:427502/149‑1 (MQ=255)                                  cccTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGcc                                                                                                                        >  5:253702/1‑146 (MQ=255)                                  cccTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGcc                                                                                                                        >  6:426198/1‑146 (MQ=255)                                          ggctggTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCggg                                                                                                              <  6:332199/148‑1 (MQ=255)                                                tCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgcc                                                                                                       <  5:232541‑M2/149‑5 (MQ=255)                                                tCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgcc                                                                                                       >  4:138902‑M2/1‑145 (MQ=255)                                                   gTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgccgac                                                                                                    <  3:266911‑M1/149‑51 (MQ=255)                                                   gTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgccgac                                                                                                    <  8:215767‑M2/149‑8 (MQ=255)                                                       cacaGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGc                                                                                                <  6:253702/149‑1 (MQ=255)                                                              ggCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCCGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGc                                                                                         >  7:243810/1‑149 (MQ=255)                                                                    gggCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCAt                                                                                   >  2:373701/1‑149 (MQ=255)                                                                       ccTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgc                                                                                                        <  6:375739‑M1/125‑47 (MQ=255)                                                                       ccTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgc                                                                                                        >  5:375739‑M1/1‑79 (MQ=255)                                                                            tCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTTGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGc                                                                           <  5:426198/149‑1 (MQ=255)                                                                                 aGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCgg                                                                      <  6:255387/149‑1 (MQ=255)                                                                                       ttCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCgt                                                                 >  7:332528/1‑149 (MQ=255)                                                                                        tCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCAAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCgt                                                                 <  8:102899/148‑1 (MQ=255)                                                                                         cTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCgtg                                                                >  1:7929/1‑148 (MQ=255)                                                                                                 aTCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGcgcc                                                       >  7:110737/1‑149 (MQ=255)                                                                                                 aTCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGcgcc                                                       >  7:116665/1‑149 (MQ=255)                                                                                                      gCTCAGGGGGGCGCCGGGAATTGGCGAGGCGCCGATGTTCCCGGCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGt                                                  <  8:243810/149‑1 (MQ=255)                                                                                                        tCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTg                                                >  7:185375/1‑149 (MQ=255)                                                                                                          aGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTg                                                <  1:373701/147‑1 (MQ=255)                                                                                                          aGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCt                                              >  7:87543/1‑149 (MQ=255)                                                                                                               ggtgCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGCCCGTGTCTGGCGCCGCCGTTGCTGACgc                                         <  1:243800/149‑1 (MQ=255)                                                                                                                gtgCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCCGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACgct                                        <  6:286039/149‑1 (MQ=255)                                                                                                                 tgCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCTTCGGGCCGTGTCTGGCGCCGCCGTTGCTGACgctg                                       <  2:406371/149‑1 (MQ=255)                                                                                                                 tgCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACgctg                                       <  7:215767/149‑1 (MQ=255)                                                                                                                     gggAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGa                                   >  3:26178/1‑149 (MQ=255)                                                                                                                             gCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCAcc                           >  5:211965/1‑149 (MQ=255)                                                                                                                               gAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTg                         <  2:331722/149‑1 (MQ=255)                                                                                                                                aGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTgg                        >  3:40815/1‑149 (MQ=255)                                                                                                                                  gcgcCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTgggg                      <  8:116665/149‑1 (MQ=255)                                                                                                                                  gcgcCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTgggg                      <  8:110737/149‑1 (MQ=255)                                                                                                                                   cgcCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCAGCGTGCTGTCATCGACCTGCATCGGGCCGTGGCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTGGGGc                     <  3:129381/149‑1 (MQ=255)                                                                                                                                        aTGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTGGGGCTGgcg                <  6:211965/149‑1 (MQ=255)                                                                                                                                              ccGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTGGGGCTGGCGCGGCAt          <  2:7929/149‑1 (MQ=255)                                                                                                                                                gTCGGCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcaggcccgaagccgtctgtgccac        <  8:215767‑M1/149‑143 (MQ=255)                                                                                                                                                gTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcaggcccgaagccgtctgtgccac        <  3:266911‑M2/149‑100 (MQ=255)                                                                                                                                                   ggCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcaggcccgaagccgtctgtgccaccga     >  4:138902‑M1/1‑4 (MQ=255)                                                                                                                                                   ggCGtcccccgcttctcggcctcgaaccactccgccagcgccttggccgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcaggcccgaagccgtctgtgccaccga     <  5:232541‑M1/149‑146 (MQ=255)                                                                                                                                                    gcggcCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcagg                            >  5:375739‑M2/1‑46 (MQ=255)                                                                                                                                                    gcggcCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGAcgccgacgggaacatcggcgcctcgccaattcccagcaccaccctgagcccgatgaatgcagaaaaactgttgatcagg                            <  6:375739‑M2/125‑80 (MQ=255)                                                                                                                                                      ggcCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGCCACCTGGGGCTGGCGCGGCATGTTCATCg  >  2:134604/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     ACCGCCTGGGCAGCAAGATTTCGCTGGGGGCGGCCCTGCTGGGCTGGTCGGTGGCACAGACGGCTTCGGGCCTGATCAACAGTTT‑TTCTGCATTCATCGGGCTCAGGGTGGTGCTGGGAATTGGCGAGGCGCCGATGTTCCCGTCGGCGGCCAAGGCGCTGGCGGAGTGGTTCGAGGCCGAGAAGCGGGGGACGCCGACCGGCATCGTGCTGTCATCGACCTGCATCGGGCCGTGTCTGGCGCCGCCGTTGCTGACGCTGCTGATGGTCACCTGGGGCTGGCGCGGCATGTTCATCG  >  NC_002947/3039181‑3039477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.