New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3293731	48 (0.670)	3 (0.040)	3/260	NT	5.7%	coding (3015/3675 nt)	PP_2893	hypothetical protein
	?	NC_002947	= 3293766	53 (0.760)					coding (3050/3675 nt)	PP_2893	hypothetical protein

CAAGGTGCAGGTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCTCACCATCCG  >  NC_002947/3293584‑3293877                                                                                                                                                    |                                                                                                                                                   cAAGGTGCAGGTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCg                                                                                                                                                   >  5:280554/1‑149 (MQ=255)        cAGGTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCcgcg                                                                                                                                             <  8:57102/148‑1 (MQ=255)          ggTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGAc                                                                                                                                           >  7:253136/1‑148 (MQ=255)           gTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTC                                                                                                                                                    >  4:373352‑M1/1‑138 (MQ=255)           gTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTC                                                                                                                                                    <  3:373352‑M1/138‑1 (MQ=255)                    ggCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGtt                                                                                                                                >  1:392321/1‑149 (MQ=255)                     gCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGtt                                                                                                                                >  6:6809/1‑148 (MQ=255)                       aaGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAg                                                                                                                             <  2:54237/149‑1 (MQ=255)                                 tACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCggg                                                                                                                   >  3:27898/1‑149 (MQ=255)                                  aCGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGc                                                                                                                  >  8:165816/1‑149 (MQ=255)                                          tGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGc                                                                                                           >  5:278256/1‑148 (MQ=255)                                            ccgccgTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCagcccgaaaccgctgaacgacagcttgtcgcggccgacttcga                                                                                                         <  2:251153‑M1/148‑44 (MQ=255)                                            ccgccgTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCaa                                                                                                        >  1:203658/1‑149 (MQ=255)                                            cccccgTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCaa                                                                                                        >  7:386989/4‑149 (MQ=255)                                               ccgTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACct                                                                                                     >  5:97435/1‑149 (MQ=255)                                                 gTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACctgc                                                                                                   >  7:242302/1‑149 (MQ=255)                                                    cACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCagcccgaaaccgctgaacgacagcttgtcgcggccgacttc                                                                                                           >  3:270765‑M1/1‑97 (MQ=255)                                                    cACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCagcccgaaaccgctgaacgacagcttgtcgcggccgacttc                                                                                                           <  4:270765‑M1/138‑42 (MQ=255)                                                    cACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTgg                                                                                                <  7:28136/149‑1 (MQ=255)                                                      cGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGt                                                                                              <  6:200008/149‑1 (MQ=255)                                                             ggTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGc                                                                                       >  1:412940/1‑149 (MQ=255)                                                                 tCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACAt                                                                                   <  5:6809/149‑1 (MQ=255)                                                                        acacGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGa                                                                             >  2:194494/1‑148 (MQ=255)                                                                          acGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATaa                                                                          >  7:197899/1‑149 (MQ=255)                                                                            ggTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGAt                                                                            <  6:32113/145‑1 (MQ=255)                                                                            ggTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGAt                                                                            >  5:32113/1‑145 (MQ=255)                                                                              tAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTc                                                                      <  6:278256/149‑1 (MQ=255)                                                                              tAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTc                                                                      <  8:242302/149‑1 (MQ=255)                                                                                 tcgtcgGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGa                                                                    >  5:58195/1‑148 (MQ=255)                                                                                   gtcgGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATAc                                                                 <  8:369671/149‑1 (MQ=255)                                                                                          atcaGACCGAGGAAGGCAAACCCGCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTATCGTTCAGCGGTTTCGGGCTGACTGCCAACCTTCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTgg                                                           <  1:9373/148‑1 (MQ=255)                                                                                           tcaGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGc                                                          >  5:381753/1‑148 (MQ=255)                                                                                             aGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCTACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGaa                                                       <  2:203658/149‑1 (MQ=255)                                                                                              gACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGCCAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATGCCCGTGGCGagc                                                      >  4:55184/1‑147 (MQ=255)                                                                                              gACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAAc                                                      >  2:233203/1‑149 (MQ=255)                                                                                               aCCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACt                                                     >  8:102387/1‑149 (MQ=255)                                                                                                 cGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACt                                                     >  4:6276/1‑147 (MQ=255)                                                                                                 cGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGa                                                   <  2:412940/149‑1 (MQ=255)                                                                                                   aGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGc                                                 <  8:253136/149‑1 (MQ=255)                                                                                                     gAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCt                                               <  6:381753/149‑1 (MQ=255)                                                                                                        ggCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTgg                                             >  7:26076/1‑148 (MQ=255)                                                                                                             gatgtccatggccatggccatggGCATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGAT‑ACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACgg                                      >  8:160552/6‑149 (MQ=255)                                                                                                                ccccATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGcc                                    >  6:239279/1‑149 (MQ=255)                                                                                                                      ggccatggccatggACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGTCCGCTAcc                              >  6:444360/1‑149 (MQ=255)                                                                                                                        ccatggccatggACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGt                            >  5:113959/1‑149 (MQ=255)                                                                                                                         catggccatggACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTg                           <  1:194494/149‑1 (MQ=255)                                                                                                                              ccatggACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCATGGCAGACGGCCGCTACCGTGCCTAc                      >  4:263702/1‑149 (MQ=255)                                                                                                                               catggACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACg                     <  8:197899/149‑1 (MQ=255)                                                                                                                                     cATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAgc               <  4:27898/149‑1 (MQ=255)                                                                                                                                      aTCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAgcg              >  3:393159/1‑149 (MQ=255)                                                                                                                                      aTCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGCCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAgcg              >  4:391040/1‑149 (MQ=255)                                                                                                                                          aTGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCt           >  3:355406/1‑148 (MQ=255)                                                                                                                                           tGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCTCa         <  8:26076/149‑1 (MQ=255)                                                                                                                                             tCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTgacttcgacatcgatgtccatggccatggccatggggggtttgccttcctcggtctgatgaccgacgattaccgtgtcatccgacaccttgaccgtggacggcgg        <  2:251153‑M2/148‑106 (MQ=255)                                                                                                                                              cGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCTCACCa      >  6:389311/1‑149 (MQ=255)                                                                                                                                               gAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTgacttcgacatcgatgtccatggccatggccatggggggtttgccttcctcggtctgatgaccgacgattaccgtgtcatccgacaccttgaccgtg                >  3:270765‑M2/1‑41 (MQ=255)                                                                                                                                               gAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTgacttcgacatcgatgtccatggccatggccatggggggtttgccttcctcggtctgatgaccgacgattaccgtgtcatccgacaccttgaccgtg                <  4:270765‑M2/138‑98 (MQ=255)                                                                                                                                                  gTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCTCACCATccg  >  2:410369/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CAAGGTGCAGGTACCCAAGGGCAAGATCACTGTACGTGAGCTGCCGCCGTCCACGGTCAAGGTGTCGGATGACACGGTAATCGTCGGTCATCAGACCGAGGAAGGCAAACCCCCCATGGCCATGGCCATGGACATCGATGTCGAAGTCGGCCGCGACAAGCTGTCGTTCAGCGGTTTCGGGCTGACTGCCAACCTGCTGGGTCATGTGCACATCGGCGATAACCTCGATACCCGTGGCGAACTGAGCCTGGCAGACGGCCGCTACCGTGCCTACGGCCAGCGCCTCACCATCCG  >  NC_002947/3293584‑3293877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.