| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4808173 = | 7 (0.100) | 13 (0.180) | 8/264 | NT | 34.7% | intergenic (‑282/‑273) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 4945372 | 42 (0.600) | intergenic (+732/+66) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein | |||||
TATAGGGCAATGGGCGGAATTCGCGCTTTGGCGG‑GTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGA > NC_002947/4808029‑4808309 | tataGGGCAATGGGCGGAATTCGCGCTTTGGCGGTGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTACGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGcgccgc > 1:65297/1‑147 (MQ=255) ggCAATGGGCGGAATTCGCGCTTTGGCGG‑GTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGAAGGTGTTCCCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgctg > 5:294656/1‑146 (MQ=255) cgCAATCGGCGTAATTCGCGCGTTGTCGG‑CTAGGCGTTTTGCGTTAGGGGTTCAGCGCCTGTGAGGGGTTCGCCGGGTGATTTTCAGCGCCTGGGAGGTGTGCGGCGGGAGTGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgcgg < 5:251392/148‑4 (MQ=25) ccGGAACGCGCGCGTTGGCGG‑GTACGGCTTTGGCGGGAGGGTTTCAGCGCCTTGGAGGGGTTCGCCGGGGGATTTTCAGCGCCTCGGAGGTGTTCGCCGGGAGAGATTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttcgc < 5:423016/148‑6 (MQ=25) cGGAATGCTGGCTTTGGCGT‑GTAGGTGTTTGGCGGGAGGTTTTCAGTGCCTGGGAGGTGTTCGGCGGGGGTTTTTCAGCGCCTGGAAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCttcgcg < 6:294656/149‑1 (MQ=25) ggAATTCGCGCTTTGGCGC‑GTAGGTGTGGGGCGGGCGGTTCTCAGCGCCGGGGAGGGGTTCGCCGGGAGATGGTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcgg < 3:386015/149‑1 (MQ=25) gAAGTCGCGCTTTGTCGG‑GAAGGGTTTCGGCCTCAGGGTTTCTGTGCCTGTGAGGTGTTCGCCGGGTGATTTTCTGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcggg < 4:334469/149‑1 (MQ=18) cgcTTGGGCGG‑GTAGGGGTTGGGCGGCAGGTGGGCAGGGCGTGGGCGGGGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGGGGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcgggtaaaccc < 2:198508/149‑8 (MQ=16) tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt < 7:247375‑M1/66‑1 (MQ=255) tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGcc < 1:214523‑M1/81‑1 (MQ=255) gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTcc > 3:193720‑M1/53‑149 (MQ=255) tgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGccccc < 3:67521‑M1/109‑1 (MQ=255) actggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTcc > 2:369738‑M1/31‑149 (MQ=255) tggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCaa < 2:139395‑M1/121‑1 (MQ=255) gccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAAtt < 5:278964‑M1/117‑1 (MQ=255) gccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAAtt > 6:278964‑M1/27‑143 (MQ=255) gccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcg < 5:84136‑M1/123‑1 (MQ=255) ccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgc < 7:158862‑M1/124‑1 (MQ=255) aaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAc > 5:84008‑M1/19‑140 (MQ=255) aaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAc < 6:84008‑M1/122‑1 (MQ=255) ggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGa > 1:208967‑M1/12‑148 (MQ=255) | TATAGGGCAATGGGCGGAATTCGCGCTTTGGCGG‑GTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGA > NC_002947/4808029‑4808309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |