New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5545666	NA (NA)	93 (1.330)	72/262	NT	100%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	0 (0.000)					coding (20/774 nt)	PP_4939	hypothetical protein

GGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGAC  >  NC_002947/5545525‑5545814                                                                                                                                                   |                                                                                                                                                      gggAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTa                                                                                                                                                 >  8:148848/1‑148 (MQ=31)     aCCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCATGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAgg                                                                                                                                             <  6:341819/148‑1 (MQ=21)       cATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAgggg                                                                                                                                           >  5:440402/1‑148 (MQ=35)         tAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑Ac                                                                                                                                       >  2:353501/1‑149 (MQ=38)          aGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACg                                                                                                                                      >  6:311739/1‑149 (MQ=39)                   ttCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCAcc                                                                                                                              <  1:154317/148‑1 (MQ=255)                   ttCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCAcc                                                                                                                              <  2:215441/148‑1 (MQ=255)                     cggcggCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCt                                                                                                                            <  7:123290/148‑1 (MQ=255)                      ggcggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTg                                                                                                                           >  3:251615/1‑148 (MQ=255)                       gcggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTa                                                                                                                         <  8:2679/149‑1 (MQ=255)                       gcggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATACTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTa                                                                                                                         <  7:125195/149‑1 (MQ=255)                            tGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGGATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGc                                                                                                                    <  6:91777/149‑1 (MQ=255)                             gACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAAACACCCTGTAgtcgcg                                                                                                                   >  6:302706/1‑144 (MQ=255)                               ccTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCggg                                                                                                                 <  2:299633/149‑1 (MQ=255)                                cTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACg                                                                                                                                      >  4:111001/1‑127 (MQ=40)                                cTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACg                                                                                                                                      <  3:111001/127‑1 (MQ=40)                                cTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGt                                                                                                                >  7:177782/1‑149 (MQ=255)                                cTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGt                                                                                                                >  5:113055/1‑149 (MQ=255)                                  aCCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGtt                                                                                                               >  6:79914/1‑148 (MQ=255)                                   cccGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCa                                                                                                             <  6:305428/149‑1 (MQ=255)                                   cccGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCa                                                                                                             >  2:381132/1‑149 (MQ=255)                                      ggATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCAccc                                                                                                          >  2:337303/1‑149 (MQ=255)                                          cAGTCGGCGAATGGTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGCAAGCGCAGCCAGGAAGGGCGG‑‑‑GGT‑‑GATCTCCTACAGGGTC‑ACGCAATCAACCTGTATGCTCGGGTTCGCAcgcg                                                                                                       >  4:313555/1‑148 (MQ=14)                                           aGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCcgcg                                                                                                       >  1:155273/1‑147 (MQ=255)                                             tCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                                   <  5:311739/149‑1 (MQ=255)                                                gCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                >  5:210490/1‑149 (MQ=255)                                                     tGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGaa                                                                                           <  4:251615/149‑1 (MQ=255)                                                      gCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                               >  5:214193/1‑144 (MQ=255)                                                      gCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                               <  6:214193/144‑1 (MQ=255)                                                        ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATCAg                                                                                        >  1:221292/1‑149 (MQ=255)                                                        ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAg                                                                                        >  7:147288/1‑149 (MQ=255)                                                        ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAg                                                                                        >  7:354479/1‑149 (MQ=255)                                                           tCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGc                                                                                      <  8:59955/148‑1 (MQ=255)                                                             tAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGCTACGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGc                                                                                      <  1:353501/149‑1 (MQ=21)                                                               gATCTCGCTGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGCCAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACCGGGGA‑ACGCAATCACCCTGTAGGAGCTGGTTCACCCGCGAAGAGGCCGGAACAGGCTga                                                                                   <  6:87418/147‑1 (MQ=255)                                                               gATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGACACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgag                                                                                  <  1:337303/149‑1 (MQ=255)                                                               gATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga                                                                                 <  8:115592/149‑1 (MQ=255)                                                               gATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTga                                                                                   >  8:386849/1‑147 (MQ=255)                                                                aTCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga                                                                                 <  7:148848/148‑1 (MQ=255)                                                                aTCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGagag                                                                                >  5:17706/1‑149 (MQ=255)                                                                 tctcGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGagag                                                                                <  6:440402/148‑1 (MQ=255)                                                                  ctcGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGt                                                                               >  6:285136/1‑148 (MQ=255)                                                                  ctcGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGt                                                                               >  3:268172/1‑148 (MQ=255)                                                                            gTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGAc                                                                    <  6:210490/149‑1 (MQ=255)                                                                              gCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCt                                                                  >  3:142467/1‑149 (MQ=255)                                                                                   tCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGTGAGATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGcc                                                               >  1:337416/1‑149 (MQ=255)                                                                                     tGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTga                                                                                   >  1:118694/1‑125 (MQ=255)                                                                                     tGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTga                                                                                   <  2:118694/125‑1 (MQ=255)                                                                                       aCGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑TCGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGa                                                          <  5:302706/148‑1 (MQ=255)                                                                                       aCGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGAc                                                         >  7:135757/1‑149 (MQ=255)                                                                                         gTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACg                                                        >  5:60047/1‑148 (MQ=255)                                                                                          tCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCa                                                      <  5:224290/149‑1 (MQ=255)                                                                                            aTGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCAc                                                     <  5:285136/148‑1 (MQ=255)                                                                                             tGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACgg                                                   <  4:268172/149‑1 (MQ=255)                                                                                                  aTCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCg                                              <  5:79914/149‑1 (MQ=255)                                                                                                  aTCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGACGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCg                                              <  5:185873/149‑1 (MQ=255)                                                                                                   tCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga                                                                                 <  8:384858/113‑1 (MQ=255)                                                                                                   tCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga                                                                                 >  7:384858/1‑113 (MQ=255)                                                                                                    ccTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGaa                                            >  8:154713/1‑149 (MQ=255)                                                                                                     cTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGaa                                            <  8:354479/148‑1 (MQ=255)                                                                                                      tGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGaa                                            >  1:46718/1‑147 (MQ=255)                                                                                                        tttGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAg                                         <  2:46718/148‑1 (MQ=255)                                                                                                        tttGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGa                                        <  2:155273/149‑1 (MQ=255)                                                                                                        tttGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGa                                        >  3:343050/1‑149 (MQ=255)                                                                                                          tGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGAc                                       <  3:178635/148‑1 (MQ=255)                                                                                                            cTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACaaa                                    <  6:113055/149‑1 (MQ=255)                                                                                                             tgtgCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAAc                                   >  5:200596/1‑149 (MQ=255)                                                                                                               tgCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAAccc                                 <  2:337416/149‑1 (MQ=255)                                                                                                                 cGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGa                                                          >  5:291256/1‑122 (MQ=255)                                                                                                                 cGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGa                                                          <  6:291256/122‑1 (MQ=255)                                                                                                                 cGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCg                               >  7:94004/1‑149 (MQ=255)                                                                                                                  gACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCgg                              >  1:102460/1‑149 (MQ=255)                                                                                                                    cAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCCGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTc                            <  2:368175/149‑1 (MQ=255)                                                                                                                      gcgcAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAgcg                                                                          <  5:181749/101‑1 (MQ=255)                                                                                                                      gcgcAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAgcg                                                                          >  6:181749/1‑101 (MQ=255)                                                                                                                       cgcAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACaa                                     >  1:93252/1‑137 (MQ=255)                                                                                                                       cgcAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACaa                                     <  2:93252/137‑1 (MQ=255)                                                                                                                       cgcAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGcc                         <  4:142467/149‑1 (MQ=255)                                                                                                                              cGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGaca                  >  5:355579/1‑149 (MQ=255)                                                                                                                                gAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGa                                        <  7:333400/125‑1 (MQ=255)                                                                                                                                gAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGa                                        >  8:333400/1‑125 (MQ=255)                                                                                                                                  aGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGtt              <  1:381132/149‑1 (MQ=255)                                                                                                                                     gCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGATCAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAg           <  2:221292/149‑1 (MQ=255)                                                                                                                                     gCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTc                            <  4:118241/132‑1 (MQ=255)                                                                                                                                     gCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTc                            >  3:118241/1‑132 (MQ=255)                                                                                                                                        g‑‑‑ggT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCATCAGGCTGAGAGTCAGCGGTTGACCTGCCGCTGACGCACGGCTTGGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGgct        >  5:67678/1‑149 (MQ=255)                                                                                                                                                  aTCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGctgctg    <  6:200596/148‑1 (MQ=255)                                                                                                                                                   tctcCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGAc  >  4:158989/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTG‑‑‑GGT‑‑GATCTCCTACAGGGGA‑ACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGAC  >  NC_002947/5545525‑5545814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.