New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5609685	68 (0.950)	4 (0.060)	3/258	NT	5.4%	coding (830/906 nt)	PP_4929	LysR family transcriptional regulator
	?	NC_002947	= 5609715	76 (1.100)					coding (800/906 nt)	PP_4929	LysR family transcriptional regulator

GGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAA  >  NC_002947/5609537‑5609833                                                                                                                                                      |                                                                                                                                                     ggCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGC                                                                                                                                                      >  8:265816‑M1/1‑149 (MQ=255) ggCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGC                                                                                                                                                      <  6:306972‑M1/149‑1 (MQ=255)  gcgcagcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGATCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCgcggcg                                                                                                                                                     <  5:251213/149‑1 (MQ=255)       gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccagg                                                                                                                                                >  1:318702/1‑149 (MQ=255)         gcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggcc                                                                                                                                              <  1:176033/149‑1 (MQ=255)         gcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggcc                                                                                                                                              <  8:171898/149‑1 (MQ=255)          caACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAACGTGCACTGCAAAGCGCTCGGCCAGCCACTCCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggcca                                                                                                                                             >  2:383512/1‑149 (MQ=255)           aaCCAGCGGCAGGCCCAGGTGAAACTGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGGCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggccag                                                                                                                                            <  7:365414/149‑1 (MQ=255)               aGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGctct                                                                                                                                        >  7:159738/1‑149 (MQ=255)                  ggCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGcc                                                                                                                                     <  3:224644/149‑1 (MQ=255)                        cccAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAg                                                                                                                               <  1:132662/149‑1 (MQ=255)                         ccAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggcca                                                                                                                                             <  6:300951/134‑1 (MQ=255)                         ccAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAgg                                                                                                                              >  5:309385/1‑149 (MQ=255)                         ccAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTAACCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCgccaggcca                                                                                                                                             >  5:300951/1‑134 (MQ=255)                            ggTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcg                                                                                                                           <  7:265816/149‑1 (MQ=255)                               gAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCcgccggccttggtggcagagctggcctggc                                                                                                                        >  5:364713‑M1/1‑119 (MQ=255)                                aaaCAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGg                                                                                                                       <  6:388596‑M2/149‑2 (MQ=255)                                aaaCAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGg                                                                                                                       <  8:82135‑M2/149‑2 (MQ=255)                                   cAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCcgccggccttggtggcagagctggcctggcgccg                                                                                                                    <  6:364713‑M1/149‑35 (MQ=255)                                    aGCAAGGTATAGAGAGTGCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgc                                                                                                                   >  6:287749‑M2/1‑144 (MQ=255)                                      cAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGTCCGGGCCCA‑GAGGTTCATCGCGGCcgccggccttggtggcagagctggcctggcgccg                                                                                                                    <  4:88888‑M1/146‑35 (MQ=255)                                      cAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCcgccggccttggtggcagagctggcctggcgccg                                                                                                                    >  3:88888‑M1/1‑112 (MQ=255)                                          gTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCg                                                                                                             <  8:159738/149‑1 (MQ=255)                                             taGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCt                                                                                                           <  1:279465/148‑1 (MQ=255)                                             taGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCt                                                                                                           <  7:12968/148‑1 (MQ=255)                                               gagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCGGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTc                                                                                                        <  1:407220/149‑1 (MQ=255)                                                agagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTc                                                                                                        >  3:398899/1‑148 (MQ=255)                                                         ttCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCGAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGAc                                                                                               >  1:357165/1‑148 (MQ=255)                                                         ttCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGAc                                                                                               <  5:323690/148‑1 (MQ=255)                                                          tCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGa                                                                                                <  3:367129/146‑1 (MQ=255)                                                          tCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGa                                                                                                >  4:367129/1‑146 (MQ=255)                                                          tCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCa                                                                                             >  4:425563/1‑149 (MQ=255)                                                            aTGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCAtg                                                                                           >  8:53022/1‑149 (MQ=255)                                                            aTGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCAtg                                                                                           <  6:309385/149‑1 (MQ=255)                                                               gcggcTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                                                        >  8:364097/1‑149 (MQ=255)                                                               gcggcTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                                                        <  8:275698/149‑1 (MQ=255)                                                               gcggcTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                                                        <  5:288738/149‑1 (MQ=255)                                                                  gcTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc                                                                                     >  5:361819/1‑149 (MQ=255)                                                                      aGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg                                                                                  >  7:42448/1‑148 (MQ=255)                                                                      aGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTg                                                                                   <  2:343820/147‑1 (MQ=255)                                                                       gTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg                                                                                  >  3:170244/1‑147 (MQ=255)                                                                       gTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTa                                                                                <  8:105508/149‑1 (MQ=255)                                                                       gTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTa                                                                                <  4:275535/149‑1 (MQ=255)                                                                        tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGGTGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg                                                                                  >  1:348215/1‑147 (MQ=255)                                                                          tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGt                                                                             >  2:152072/1‑149 (MQ=255)                                                                           aCCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTc                                                                            >  3:130225/1‑149 (MQ=255)                                                                            cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAgg                                                                              <  5:388596/146‑1 (MQ=255)                                                                            cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCg                                                                           >  5:84909/1‑149 (MQ=255)                                                                                   gcgcgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTg                                                                    <  4:170244/149‑1 (MQ=255)                                                                                     gcgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGca                                                                  <  5:383420/149‑1 (MQ=255)                                                                                      cgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcac                                                                 <  6:84909/149‑1 (MQ=255)                                                                                             gCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGc                                                          >  8:2932/1‑149 (MQ=255)                                                                                             gCACTGCAAAGCGCTCGGACAGCCACTGCGCGCCCGGTCCCA‑GAGGATCATCGCGGCTACAGGCCAGCTCTGCGACCAAGGCCGGCGTCCGCCACTCGCTGAACAGTTCGCCCATGTGCGCCTGGTAGGTCGGGTACTGCACCAAATGc                                                          >  4:172491/1‑149 (MQ=255)                                                                                                 agCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCCAGGCCGCCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGCTCGGGTCCTGCACCACATGCCggg                                                      >  5:136938/2‑149 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGTGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgggg                                                     >  2:318746/1‑148 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGt                                                                                                    >  1:226417/1‑101 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGt                                                                                                    <  2:226417/101‑1 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCggg                                                      <  4:398899/147‑1 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCggg                                                      >  7:313847/1‑147 (MQ=255)                                                                                                   cAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGACAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCggg                                                      <  8:313847/147‑1 (MQ=255)                                                                                                         gcTCGGCCAGCCACTCCGCGGCCCCTACCA‑GAGGATCAACTAGTCGCCAGTCCAGCTCAGCCACCAAGGACGGCGCCCGCCAGTCGATGTCCAGTTCGACCATGTGCGCCTGCTAGCTCGGGAACTGCACCACAAGACGGGGTAACAAg                                              >  2:73592/1‑149 (MQ=255)                                                                                                          cTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAgg                                             <  2:318702/149‑1 (MQ=255)                                                                                                              gccagccaCTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCa                                         <  7:107112/149‑1 (MQ=255)                                                                                                               ccagccaCTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAg                                        >  5:293791/1‑149 (MQ=255)                                                                                                                 agccaCTGCGCGGCGGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCATGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGcc                                      <  1:383512/149‑1 (MQ=255)                                                                                                                 agccaCTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGc                                       >  7:32158/1‑148 (MQ=255)                                                                                                                   ccaCTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCaa                                    <  4:322534/149‑1 (MQ=255)                                                                                                                       tGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCG‑CAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCcg                               >  3:98644/1‑149 (MQ=255)                                                                                                                         cgcgGCCGGGCCTA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCcg                               <  1:152072/148‑1 (MQ=255)                                                                                                                              ccGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATc                         <  6:361819/149‑1 (MQ=255)                                                                                                                                gggCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCTGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATcag                       <  8:45824/149‑1 (MQ=255)                                                                                                                                 ggCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATcag                       >  7:37989/1‑148 (MQ=255)                                                                                                                                  gCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATcag                       >  6:397770/1‑147 (MQ=255)                                                                                                                                  gCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATcag                       >  3:171202/1‑147 (MQ=255)                                                                                                                                    ccA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCGGGCCCAGCCAAGGCCGCGCATCAGCAGt                   >  5:253644/1‑149 (MQ=255)                                                                                                                                    ccA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGt                   >  7:245202/1‑149 (MQ=255)                                                                                                                                     cA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGtt                  >  3:405803/1‑149 (MQ=255)                                                                                                                                        gagGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCg                <  7:53022/149‑1 (MQ=255)                                                                                                                                                  gcgGCcgccggccttggtggcagagctggcctggcgccgcgatgaacctctgggcccggccgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagcactctctataccttgct      >  6:287749‑M1/1‑5 (MQ=255)                                                                                                                                                   cggcgCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcgatgaacctctgggcccggccgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctg     <  6:364713‑M2/149‑116 (MQ=255)                                                                                                                                                   cggcgCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcgatgaacctctgggcccggccgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttg        >  3:88888‑M2/1‑34 (MQ=255)                                                                                                                                                   cggcgCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcgatgaacctctgggcccggacgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttg        <  4:88888‑M2/146‑113 (MQ=255)                                                                                                                                                   cggcgCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCCGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCg       >  7:307050/1‑147 (MQ=255)                                                                                                                                                      ccgccggccttggtggcagagctggcctggcgccgcgatgaacctctgggcccggccgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctgttt  <  6:388596‑M1/149‑149 (MQ=255)                                                                                                                                                      ccgccggccttggtggcagagctggcctggcgccgcgatgaacctctgggcccggccgcgcagtggctggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctgttt  <  8:82135‑M1/149‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCA‑GAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGCCGCGCATCAGCAGTTCGGCCATGGCGTAGAA  >  NC_002947/5609537‑5609833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.