New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419549	29 (0.400)	21 (0.300)	16/262	NT	54.3%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	7 (0.100)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

CGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG  >  NC_002947/1419556‑1419780                                                                                 |                                                                                                                                                     cgGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaaagcccaccgacaacaccacagaacccacc                                                                                  <  8:14752‑M2/149‑69 (MQ=255)  GGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACg                                                                                 <  4:299914‑M1/149‑1 (MQ=255)    GCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGcc                                                                               <  8:303241‑M1/149‑1 (MQ=255)      aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaac                                                                                                 <  6:97472‑M2/129‑54 (MQ=255)      aCGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaac                                                                                                 >  5:97472‑M2/1‑76 (MQ=255)          CCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGTCCTGACCTGCTACTGCAATGTTTGAGGCTCTGTGGTTAAATGCTACCGCATCTTCAACTGCATCAACGCCGA‑‑‑‑CTc                                                                      <  2:327695‑M1/148‑1 (MQ=255)          CCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTc                                                                      <  7:119066‑M1/148‑1 (MQ=255)           CGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCA‑GGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGAc                                                                   <  4:42174‑M1/149‑1 (MQ=255)              tCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaaga                                                                     <  5:174949‑M2/149‑82 (MQ=255)                CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGc                                                               <  6:351148‑M1/149‑1 (MQ=255)                      GTACTGTGCAGTGCGTGACGGCTGTGGAGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTg                                                          <  1:12545‑M1/148‑1 (MQ=255)                                   cGTGACGGCTGTGGTGCCCCTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCTGACCTGCTAATCCAAGGTGTGCGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCCGCCCCTGTACCGCTTCCAttt                                            >  7:12668/1‑149 (MQ=255)                                    gTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTACCGCTTCCAttt                                            >  8:91783/1‑148 (MQ=255)                                      gACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTACCGCTTCCATTTCAt                                         >  8:366619/1‑149 (MQ=255)                                       aCGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTACCGCTTCCATTTCAt                                         <  3:299914/148‑1 (MQ=255)                                         ggCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaaca                                          >  6:174949‑M2/1‑41 (MQ=255)                                          gCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTAc                                                       <  4:347505/131‑1 (MQ=255)                                               acagtacctgtgggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacc                                    <  4:207737‑M2/143‑115 (MQ=255)                                               acagtacctgtgggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacc                                    >  1:189392‑M2/7‑35 (MQ=255)                                                 agtacctgtgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacatgcttctaccaaggcgaaaacaacactcacccg                                  <  4:45548‑M2/145‑117 (MQ=255)                                                    cccTGTGGGAGCGGTCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCTACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGc                           <  8:12668/149‑1 (MQ=255)                                                      cTGTGGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgtt                             <  4:68286‑M2/149‑122 (MQ=255)                                                         tgGGAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttc                            >  5:428746‑M2/1‑25 (MQ=255)                                                          gggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccg                          <  2:134626‑M2/148‑125 (MQ=255)                                                           ggAGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgca                        <  5:283072‑M2/149‑127 (MQ=255)                                                            gAGCGGCCGTGCCCGCGAAGAGgccagcccacgcaacccagaatccagggaaacaaaacaatgcccacagacaaaacaacagaacccaccacagtcggcaagacatgcttctacaaaggcgaaaacaacactcacaccctgttccgcat                       <  7:112009‑M2/149‑128 (MQ=255)                                                             aGCGGGCGTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatc                      <  5:60865‑M2/149‑129 (MQ=255)                                                             aGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCTGTAACGCCGAAATGCTCGAGCAGCACATGTACATCTTCGAATTCATGGATCACGGCCTGCaac                        >  1:359253/1‑145 (MQ=255)                                                                    gTGCCCGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccg               <  4:310092‑M2/149‑136 (MQ=255)                                                                       cccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggca            <  1:111476‑M2/149‑139 (MQ=255)                                                                        ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgcacccggcat           <  3:323545‑M2/149‑140 (MQ=255)                                                                        ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcat           <  1:405586‑M2/149‑140 (MQ=255)                                                                        ccGCGAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcat           <  4:59478‑M2/149‑140 (MQ=255)                                                                         cgcgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatc          >  2:111476‑M2/1‑9 (MQ=255)                                                                           cgAAGAGgccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatccc        >  6:232158‑M2/1‑7 (MQ=255)                                                                               gaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgc    <  2:425811‑M2/149‑147 (MQ=255)                                                                                 ggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgcca  >  1:134626‑M2/1‑1 (MQ=255)                                                                                 ggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaacactcacccgctgttccgcatcgaacccggcatcccctgcc   >  6:8750‑M2/1‑1 (MQ=255)                                                                                 |                                                                                                                                                     CGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA‑‑‑‑CTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG  >  NC_002947/1419556‑1419780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.