New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664008 =	25 (0.350)	5 (0.090)	5/220	NT	20.6%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664089 =	18 (0.310)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

CCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT  >  NC_002947/2664022‑2664237                                                                     |                                                                                                                                                     CCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAgg                                                                      <  4:419837‑M1/148‑1 (MQ=255)  ccgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGc                                                                     >  2:330084‑M2/68‑149 (MQ=255)  CGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCaa                                                                                  <  4:270878‑M1/135‑1 (MQ=255)  CGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCaa                                                                                  >  3:270878‑M1/1‑135 (MQ=255)   cgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa                                                                    >  7:178882‑M2/67‑149 (MQ=255)   GCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAc                                                                   <  2:256641‑M1/149‑1 (MQ=255)    gcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGACCCTGATTCCATGATGAACACTGCATACAGCAAGCACCTGCCAGGCAc                                                                   >  4:166181‑M2/66‑149 (MQ=255)      gaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAcc                                                                  >  8:240692‑M2/64‑148 (MQ=255)       ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCATGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGAc                                                               <  5:225468‑M1/149‑1 (MQ=255)            cccGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa                                                          >  5:191046/1‑149 (MQ=255)             ccGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCGCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa                                                          >  1:95994/1‑149 (MQ=255)                   ttGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTc                                                   >  1:221282/1‑149 (MQ=255)                     tgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCg                                                  <  8:178882‑M2/101‑1 (MQ=255)                      tAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGAc                                                <  6:225468/149‑1 (MQ=255)                        aCCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGc                                              >  6:151687/1‑149 (MQ=255)                          cACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCCCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGAAAGCACCTGCCAGGCTCCGACCTGGACTACTTCGACGccc                                            >  6:310065/1‑149 (MQ=255)                          cACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGccc                                            <  2:221282/149‑1 (MQ=255)                          cACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGccc                                            >  4:187738/1‑149 (MQ=255)                          cACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGccc                                            >  4:380687/1‑149 (MQ=255)                            cTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCcgc                                          >  2:286760/1‑149 (MQ=255)                               tgCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCcgcgcg                                       <  1:256641/149‑1 (MQ=255)                                gCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCcgcgcac                                      >  1:283096/1‑147 (MQ=255)                                gCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCgcgg                                      >  8:68540/1‑149 (MQ=255)                                  aCCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAg                                                                       >  5:58078/1‑114 (MQ=255)                                  aCCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAg                                                                       <  6:58078/114‑1 (MQ=255)                                  aCCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCgcggcg                                    >  3:296112/1‑149 (MQ=255)                                  aCCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACAGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCgcggcg                                    <  1:286760/149‑1 (MQ=255)                                   ccTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGcggcgg                                   >  3:217144/1‑149 (MQ=255)                                             gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGa                          >  5:318758‑M2/25‑149 (MQ=255)                                             gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGa                          >  6:435785‑M2/25‑149 (MQ=255)                                               attcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGAc                                                >  1:193109‑M2/23‑125 (MQ=255)                                               attcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGAc                                                <  2:193109‑M2/103‑1 (MQ=255)                                               attcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGAt                         >  1:154703‑M2/23‑148 (MQ=255)                                                ttcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATc                        >  8:187582‑M2/22‑148 (MQ=255)                                                   gcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATc                        >  6:354593‑M2/19‑145 (MQ=255)                                                   gcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATc                        <  5:354593‑M2/127‑1 (MQ=255)                                                   gcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGc                    >  5:88107‑M2/19‑149 (MQ=255)                                                            cccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGCCCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGcc            >  7:368318‑M2/10‑148 (MQ=255)                                                               gctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTac         >  3:20707‑M2/7‑148 (MQ=255)                                                                  cccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTacgacg     >  3:371751‑M2/4‑149 (MQ=255)                                                                   ccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACgg    <  3:187738‑M2/147‑1 (MQ=255)                                                                   ccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACgg    >  8:200058‑M2/3‑149 (MQ=255)                                                                   ccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACgg    >  3:230006‑M2/3‑149 (MQ=255)                                                                     acaGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCt  >  5:385050/1‑149 (MQ=255)                                                                     acaGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCt  >  7:54110/1‑149 (MQ=255)                                                                     |                                                                                                                                                     CCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGC‑CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGCT  >  NC_002947/2664022‑2664237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.