New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2806825	45 (0.630)	3 (0.040)	3/250	NT	6.9%	coding (199/969 nt)	Nuh	ribonucleoside hydrolase
	?	NC_002947	= 2806859	39 (0.580)					coding (233/969 nt)	Nuh	ribonucleoside hydrolase

CTGGCCATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGAA  >  NC_002947/2806714‑2807004                                                                                                                                                  |                                                                                                                                                  cTGGCCATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGcc                                                                                                                                                 >  3:44488‑M2/1‑146 (MQ=255)     ccATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgccca                                                                                                                                            >  1:282643‑M2/1‑142 (MQ=255)     ccATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgccca                                                                                                                                            >  5:15636‑M2/1‑142 (MQ=255)     ccATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgccca                                                                                                                                            >  5:21768‑M2/1‑142 (MQ=255)     ccATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGAGTACGCTGGTGCCGGccgccca                                                                                                                                            <  3:8896‑M2/149‑8 (MQ=255)        tGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAGGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTg                                                                                                                                         <  3:54186/149‑1 (MQ=255)          gCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCTGTGTACGCTGGTGCCGGCCGCCCATTGGt                                                                                                                                       <  2:189523/149‑1 (MQ=255)           cgtCGCCCCACGAACTCAGGATCCGCGCCATCACCACCGTGGCCGTCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTTGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTg                                                                                                                                      <  4:258097/147‑1 (MQ=255)            ttCGCCCCACGAACTCAGTCTCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTgc                                                                                                                                     <  2:305170/149‑1 (MQ=255)            ttCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTgc                                                                                                                                     >  2:372343/1‑149 (MQ=255)              cGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTgcg                                                                                                                                    <  3:179906/148‑1 (MQ=255)              cGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTgcg                                                                                                                                    <  1:15535/148‑1 (MQ=255)              cGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTgc                                                                                                                                     <  7:301917/147‑1 (MQ=255)                  ccACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCTCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTg                                                                                                                                      <  5:249523/142‑1 (MQ=255)                  ccACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCTCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTg                                                                                                                                      >  6:249523/1‑142 (MQ=255)                   cACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGcc                                                                                                                              >  7:13764/1‑149 (MQ=255)                        aCTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATc                                                                                                                          >  4:161309/1‑148 (MQ=255)                             gTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTAcgcc                                                                                                                    >  6:103126/1‑149 (MQ=255)                                tCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTAcgccgc                                                                                                                  <  5:346305/148‑1 (MQ=255)                                tCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACgccgcc                                                                                                                 >  1:254182/1‑149 (MQ=255)                                tCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACgccgcc                                                                                                                 <  8:13764/149‑1 (MQ=255)                                         tCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCa                                                                                                         <  1:372343/148‑1 (MQ=255)                                         tCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCAGTGGTGCGCACGCCGATCTACGCCGCCGACGTTCAt                                                                                                        >  3:57443/1‑149 (MQ=255)                                           accaccGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATg                                                                                                       <  2:393181/148‑1 (MQ=255)                                                     ccGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGc                                                                                            <  4:237935/149‑1 (MQ=255)                                                     ccGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGc                                                                                            >  6:34031/1‑149 (MQ=255)                                                      cGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGACCGCCTGGCGCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTCGTGCCGGCCGCCCATTGGAGCGCACGCCGATCTACGCCGCCGACGATCATCGCGAAGAAGGc                                                                                            >  1:308074/1‑148 (MQ=255)                                                                 gCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGa                                                                                                               >  3:134360/1‑118 (MQ=255)                                                                 gCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGa                                                                                                               <  4:134360/118‑1 (MQ=255)                                                                    tGGACAAGACCTCGCTCTTTGCCCGGCTGGCCGGCGAATGGGCGGGGCGTGAAGTGTTCCTGGTGTACGCTGGTGGCGGCCTCCTTTTGGTGGTCACGCCGTTTTACGCCGGCGACGTTCTTGGGGTATAATGGCTCAGCGGCGTACAg                                                                             <  2:308074/149‑1 (MQ=255)                                                                       aCAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGTTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTg                                                                          >  7:128722/1‑149 (MQ=255)                                                                         aaGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAgg                                                                                             <  4:330389/128‑1 (MQ=255)                                                                         aaGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGc                                                                                   <  7:201023/138‑1 (MQ=255)                                                                         aaGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGc                                                                                   >  8:201023/1‑138 (MQ=255)                                                                          aGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCAc                                                                       <  7:62771/149‑1 (MQ=255)                                                                              cTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGc                                                                   >  6:124255/1‑149 (MQ=255)                                                                                     aaTGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAgc                                                            <  5:34031/149‑1 (MQ=255)                                                                                     aaTGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAgc                                                            >  3:280942/1‑149 (MQ=255)                                                                                                 gCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGccc                                                 <  2:113507/148‑1 (MQ=255)                                                                                                   ccGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAgg                                              <  2:13763/149‑1 (MQ=255)                                                                                                   ccGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAgg                                              >  1:360832/1‑149 (MQ=255)                                                                                                       gAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgcccattcgcgggccaggcgggcattgcgcgaggtgttgtccaggcgaacgttgccggccacggtggtgatggcgcggatactgagttcgtggggcgaa                                              >  2:317715‑M2/1‑44 (MQ=255)                                                                                                       gAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgcccattcgcgggccaggcgggcattgcgcgaggtcttgtccaggcgaacgttgccggccacggtggtgatggcgcggatactgagttcgtggggcgaa                                              <  1:317715‑M2/145‑102 (MQ=255)                                                                                                         aTGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGccgcccattcgcgggccaggcgggcattgcgcgaggtcttgtccaggcgaacgttgccggccacggtggtgatggcgcggatactgagttcttggggcgaagccatg                                        <  6:111735‑M2/149‑108 (MQ=255)                                                                                                            ggcggggcgTGAAGACATCCCGGTGTACGTTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGcc                                      <  8:128722/148‑1 (MQ=255)                                                                                                              cggggcgTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACTCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTg                                   <  2:254182/149‑1 (MQ=255)                                                                                                              cggggcgTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTg                                   <  3:161309/149‑1 (MQ=255)                                                                                                                     tGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATAcc                            >  8:224653/1‑149 (MQ=255)                                                                                                                         gACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGt                        <  7:224653/149‑1 (MQ=255)                                                                                                                          aCATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                       >  8:374856/1‑149 (MQ=255)                                                                                                                               ccGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCCCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATAc                  >  1:66792/1‑149 (MQ=255)                                                                                                                                     tACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCgg            >  8:50149/1‑149 (MQ=255)                                                                                                                                       cGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGgcg          >  5:86918/1‑149 (MQ=255)                                                                                                                                        gCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGgcg          >  4:293613/1‑148 (MQ=255)                                                                                                                                        gCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGCTGCACGCGCCGCAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAAGTCCTGGTCGCTACCCTCGgcgc         >  5:422110/1‑149 (MQ=255)                                                                                                                                               ccggccgCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGac  >  8:203470/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CTGGCCATGGCTTCGCCCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGAA  >  NC_002947/2806714‑2807004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.