| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3947940 | 18 (0.250) | 6 (0.110) | 5/212 | NT | 26.5% | coding (109/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | = 3947969 | 19 (0.340) | coding (80/1797 nt) | PP_3483 | type II secretion system protein | |||||
CAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTC > NC_002947/3947827‑3948114 | cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtg > 3:244944‑M2/1‑143 (MQ=255) aGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg > 7:203846‑M2/1‑142 (MQ=255) ggCAGGCGAGCTGGCGCTCGTAAGGGGCTTGCAGCCGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGCTTTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggg > 1:349348‑M2/1‑141 (MQ=255) gCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg > 8:208749‑M2/1‑140 (MQ=255) aGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagc > 4:77815‑M2/1‑138 (MQ=255) tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCGGGGCCAGGACGTCGCGGGGGTATGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAGGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg > 7:211301‑M2/1‑136 (MQ=255) cGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgg > 3:53811‑M2/1‑135 (MQ=255) cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggc < 1:437198‑M2/140‑16 (MQ=255) cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggc > 2:437198‑M2/1‑125 (MQ=255) aTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcg > 2:193807/1‑149 (MQ=255) tGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc > 1:279997/1‑149 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGcgcg > 1:300978/1‑149 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGcgcg > 1:111769/1‑149 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGcgcg > 6:119249/1‑149 (MQ=255) cccGCTCCCAGAGGTACATGAATGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc < 8:46334/129‑1 (MQ=255) cccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCAGCGAATACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc > 7:46334/1‑129 (MQ=255) gCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgccctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgact < 8:39306‑M2/149‑110 (MQ=255) gCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagc > 2:5342‑M2/1‑40 (MQ=255) tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgc < 3:387325‑M2/149‑112 (MQ=255) tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgc < 7:158706‑M2/149‑112 (MQ=255) ccACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagcctctgacgagcgcctgctcgactgcc > 4:387325‑M2/1‑36 (MQ=255) cacaGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct > 7:330748/1‑149 (MQ=255) cATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCgg < 2:279997/148‑1 (MQ=255) aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt > 1:408553/1‑85 (MQ=255) aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt < 2:408553/85‑1 (MQ=255) aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa > 3:396526/1‑93 (MQ=255) aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa < 4:396526/93‑1 (MQ=255) aTCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc > 4:191514/1‑148 (MQ=255) gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCAAGGGGTg > 3:113585/1‑149 (MQ=255) cTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCg > 7:11587/1‑149 (MQ=255) tgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTACTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgc > 3:192657/1‑149 (MQ=255) cTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgccg > 5:44964/1‑149 (MQ=255) cATACTTcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgactgcctggaacgcctggcctgcgacacccccgac > 8:158706‑M2/1‑7 (MQ=255) aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAt > 3:187147/1‑149 (MQ=255) tACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt > 8:224817/1‑149 (MQ=255) aCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTc > 6:242433/1‑149 (MQ=255) tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg > 6:307169/1‑128 (MQ=255) tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg < 5:307169/128‑1 (MQ=255) | CAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTC > NC_002947/3947827‑3948114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |