New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4551973	15 (0.210)	9 (0.170)	8/202	NT	37.3%	intergenic (+67/+114)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
	?	NC_002947	= 4552024	19 (0.350)					intergenic (+118/+63)	pydA/rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family

CGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCAC  >  NC_002947/4551878‑4552167                                                                                                                                                   |                                                                                                                                                cgcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCTCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgc                                                                                                                                               >  1:83186‑M2/1‑147 (MQ=255)   cgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcgg                                                                                                                                             >  7:59013‑M2/1‑145 (MQ=255)    gTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggc                                                                                                                                            >  6:131844‑M2/1‑144 (MQ=255)    gTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggc                                                                                                                                            >  4:336630‑M2/1‑144 (MQ=255)     tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcc                                                                                                                                           >  7:358643‑M2/1‑143 (MQ=255)       aCCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCGAAgcggccc                                                                                                                                          >  7:174573‑M2/1‑141 (MQ=255)         cccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcgg                                                                                                                                             <  7:145317‑M2/143‑5 (MQ=255)         cccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcgg                                                                                                                                             >  8:145317‑M2/1‑139 (MQ=255)              ccGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcga                                                                                                                                  >  1:24062‑M2/1‑134 (MQ=255)              ccGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcg                                                                                                                                   >  2:7280‑M2/1‑134 (MQ=255)                 tGAGGCCAGTTTACGCGGGTCACCGCCTTACCCGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCTATACAGACATCGCGGGGCCGCTTCgcggcccgatcgcgacac                                                                                                                               >  2:124022‑M2/1‑131 (MQ=255)                                        cGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcg                                                                                                                                              <  8:187401‑M2/111‑4 (MQ=255)                                        cGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcg                                                                                                                                              >  7:187401‑M2/1‑108 (MQ=255)                                                                                    gcgATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacgg                                                              <  5:58723‑M2/147‑84 (MQ=255)                                                                                      gATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtagg                                                          <  7:187602‑M2/149‑88 (MQ=255)                                                                                      gATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATccc                                                              <  8:372876/145‑1 (MQ=255)                                                                                      gATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATccc                                                              >  7:372876/1‑145 (MQ=255)                                                                                       agcggCCCGCACAGGGGCCCCAGCAGTTTTTCCCCCTAACCACACATGGGGGGGCCGCTCCgcggccctatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggg                                                         >  6:58723‑M2/3‑61 (MQ=255)                                                                                       aTCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggg                                                         <  5:295593‑M2/149‑89 (MQ=255)                                                                                           ggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggtta                                                     <  6:232008‑M2/149‑93 (MQ=255)                                                                                            gCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACg                                                                              >  4:312562/1‑123 (MQ=255)                                                                                            gCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACg                                                                              <  3:312562/123‑1 (MQ=255)                                                                                              cGCACAGCGGCCCCAACAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAc                                                  >  3:219477/1‑149 (MQ=255)                                                                                                  ccgcgGCCCCAGCAGTCTTGGCCTCGAGACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgcggat                                              >  8:390119‑M2/3‑50 (MQ=255)                                                                                                   aGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTgg                                             >  2:383426/1‑149 (MQ=255)                                                                                                       gCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCAc                                         >  4:27790/1‑149 (MQ=255)                                                                                                          ccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCAc                                                                               <  3:374385/108‑1 (MQ=255)                                                                                                          ccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCAc                                                                               >  4:374385/1‑108 (MQ=255)                                                                                                          ccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATc                                                                >  6:260290/1‑123 (MQ=255)                                                                                                          ccAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATc                                                                <  5:260290/123‑1 (MQ=255)                                                                                                                gTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCAc                                >  1:214786/1‑149 (MQ=255)                                                                                                                   tttGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCg                              >  8:165673/1‑148 (MQ=255)                                                                                                                   tttGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCg                              >  1:14586/1‑148 (MQ=255)                                                                                                                     tGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCa                            <  4:219477/148‑1 (MQ=255)                                                                                                                       ccGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGCCCGCTCCCACAAAAAGACCACGACCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGACACCGTCTGCACCCCagt                          >  5:59953/1‑146 (MQ=255)                                                                                                                        cgcgATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATtct                        >  5:204652/1‑149 (MQ=255)                                                                                                                                aGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGc                 >  5:186469/1‑148 (MQ=255)                                                                                                                                       gAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgcggatcctgcgtccagttcaggtacggcttgccggtatcctg         >  6:295593‑M2/1‑13 (MQ=255)                                                                                                                                       atcgggccgCACAgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgcggatcctgcgtccagttcaggtacggcttgccggtatcctg         <  6:214660‑M2/146‑137 (MQ=255)                                                                                                                                         ggggCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGa        >  5:198504/1‑148 (MQ=255)                                                                                                                                              cGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgcggatcctgcgtccagttcaggtacggcttgccggtatcctgtgcctcc  >  8:187602‑M2/1‑6 (MQ=255)                                                                                                                                                   |                                                                                                                                                CGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCAC  >  NC_002947/4551878‑4552167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.