New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4893553 =	33 (0.460)	4 (0.070)	4/214	NT	17.7%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893632 =	11 (0.190)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter

TCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACG  >  NC_002947/4893509‑4893777                                                                                                                            |                                                                                                                                                  tCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCAACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATa                                                                                                                          <  8:183492/149‑1 (MQ=255)                                                      AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAtt                                                                                                                                                  >  4:340701‑M1/1‑72 (MQ=255)                                                      AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAtt                                                                                                                                                  <  3:340701‑M1/72‑1 (MQ=255)                                                            GCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc                                                               <  1:103219‑M1/149‑1 (MQ=255)                                                               cccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc                                                            >  2:343782‑M2/62‑149 (MQ=255)                                                                ccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc                                                            >  6:224639‑M2/61‑148 (MQ=255)                                                                 cacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCTACCTCGGAAAACATAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCa                                                          >  4:278687‑M2/60‑149 (MQ=255)                                                                 CACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGCGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCa                                                          <  5:274853‑M1/149‑1 (MQ=255)                                                                      GGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCa                                                                    <  6:371200‑M1/134‑1 (MQ=255)                                                                      GGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCtccacaga                                                      <  5:276324‑M1/148‑4 (MQ=255)                                                                      GGCCACGCTGGCACAAGGGAATGCAGACCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCa                                                                    >  5:371200‑M1/1‑134 (MQ=255)                                                                        ccACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCactgactg                                                   >  7:121759/1‑149 (MQ=255)                                                                          aCGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctc                                                                                                                                  >  2:322104/1‑68 (MQ=255)                                                                          aCGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctc                                                                                                                                  <  1:322104/68‑1 (MQ=255)                                                                                  acaAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTac                                         >  6:441316/1‑149 (MQ=255)                                                                                    aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGt                                           >  7:98361/1‑145 (MQ=255)                                                                                    aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGt                                           <  8:98361/145‑1 (MQ=255)                                                                                    aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac                                       >  2:108998/1‑149 (MQ=255)                                                                                      gggAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTa                                          >  1:312442/1‑144 (MQ=255)                                                                                      gggAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTa                                          <  2:312442/144‑1 (MQ=255)                                                                                         cagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCaaaa                                  <  5:224639‑M2/114‑1 (MQ=255)                                                                                         aaTGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCaaa                                   >  2:93840/1‑148 (MQ=255)                                                                                            gCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGCAAACCGAGGCCCAAAGCGGCCCACCGCTCCCCCAGCAACCGCCACTGACTGCCCCAGGTACACCAAAACtt                               >  5:364010/1‑149 (MQ=38)                                                                                                tCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCg                            >  3:218052/1‑148 (MQ=255)                                                                                                             ggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGcccc              >  1:30772‑M2/16‑149 (MQ=255)                                                                                                                 ttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACt          >  5:34481‑M2/12‑149 (MQ=255)                                                                                                                    tgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGATGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTgg        <  3:278687‑M2/140‑1 (MQ=255)                                                                                                                      tcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGc      >  5:401399‑M2/7‑148 (MQ=255)                                                                                                                      tcgcgaTTGGAGGACAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGCCTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGcc     >  4:125830‑M2/7‑149 (MQ=255)                                                                                                                        gcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTaca                                        <  3:41447‑M2/108‑1 (MQ=255)                                                                                                                        gcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTaca                                        >  4:41447‑M2/5‑112 (MQ=255)                                                                                                                        gcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCAc   >  1:372721‑M2/5‑149 (MQ=255)                                                                                                                         cgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACg  <  2:103219‑M2/146‑1 (MQ=255)                                                                                                                         cgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACg  >  8:335101‑M2/4‑149 (MQ=255)                                                                                                                            |                                                                                                                                                  TCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACG  >  NC_002947/4893509‑4893777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.