New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897734 =	33 (0.460)	4 (0.060)	4/250	NT	10.4%	intergenic (‑134/+100)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897845 =	38 (0.570)					coding (3043/3054 nt)	PP_5173	RND family transporter

AGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGC  >  NC_002947/5897708‑5897991                                                                                                                                          |                                                                                                                                                   aGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg                                                                                                                                          <  7:106091/148‑1 (MQ=255)                        gagaACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGTAGATGCACCATAGCATTAGCGGGTAAAACCGCTCCTACCAGGGGCCATATGGGCCTTAAGGCGTTTTTATGAGGCTCGGGGGTATTGTAACAGGCCACGTa                                                                                                                   >  8:266114/1‑148 (MQ=255)                             CACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgc                                                                                                               <  1:310640‑M1/147‑1 (MQ=255)                             CACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgc                                                                                                               >  2:310640‑M1/1‑147 (MQ=255)                                  CTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTTAACCCGCGCCTACCAGGGGCCATATGGGGCGTCAGGCGTGTTTCTGCGGCTCGCGGATCGTGTACCCGGCCACGTACCGCGCCgg                                                                                                          <  4:260590‑M1/147‑1 (MQ=255)                                                 gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTGTGCGGCTCGAGGATCTTGTCCCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGt                                                                                           >  7:201584/1‑147 (MQ=255)                                                       ccGCGAATGCGATGGTGCATCGACCACCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa                                                                                         <  7:119914/143‑1 (MQ=37)                                                       ccGCGAATGCGATGGTGCATCGACCACCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCa                                                                                         >  8:119914/1‑143 (MQ=37)                                                        cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt                                                                                  >  4:110787/1‑149 (MQ=255)                                                         gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc                                                                                 >  3:832/1‑149 (MQ=37)                                                         gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc                                                                                 >  4:160098/1‑149 (MQ=255)                                                           gAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGc                                                                               >  3:6056/1‑149 (MQ=255)                                                                  gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgat                                                                         >  3:86888/1‑148 (MQ=255)                                                                         cgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagaggcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc                                                                 >  2:80655‑M2/66‑149 (MQ=255)                                                                          tGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc                                                                <  3:160098/149‑1 (MQ=255)                                                                          gtctccATCGCCTTCTCGTGTAAACCCTCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAAGTACAGCGCCGGCAGGAACATCAGCGTCAGCAAGGTCGCCACGATGATCCCGc                                                                 <  8:201584/144‑1 (MQ=255)                                                                          gcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagaggcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc                                                                 >  7:214293‑M2/65‑148 (MQ=255)                                                                           gCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc                                                                >  4:193336/1‑148 (MQ=255)                                                                           gCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTAGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc                                                                >  5:31767/1‑148 (MQ=255)                                                                           cgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagaggcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc                                                                >  3:396461‑M2/64‑148 (MQ=255)                                                                             aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAAt                                                             >  7:44696/1‑149 (MQ=255)                                                                                 tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg                                                         >  6:247394/1‑149 (MQ=255)                                                                                 tCGCATTCGCGGGTAAACCCGCGCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa                                                                                                     >  7:274258/1‑105 (MQ=255)                                                                                    cATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCg                                                      <  7:266114/149‑1 (MQ=255)                                                                                        cgcgGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAg                                                   <  3:110787/148‑1 (MQ=255)                                                                                         gcgGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGc                                                 >  7:378555/1‑149 (MQ=255)                                                                                               ccaccgtattcgcgggtaaacccgctcctaccagaggcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATggg                                           <  8:214293‑M2/106‑1 (MQ=255)                                                                                                 aCCCGATCCTACCATGGGCCATATGGGCCTTAAGGCGTGTTTCTGCGTATCGCGGATCTTGTACCAGGACACGTACAGCGCCGGCAGGAAAAGCAGCGTCAGCAATGTCGCAACGATGATCCCGCCAATCATGGCTAAGGCAATGGGGc                                         >  7:215523/1‑149 (MQ=255)                                                                                                  cccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGcc                                        >  6:118735/1‑149 (MQ=255)                                                                                                   ccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc                                       >  2:257701/1‑149 (MQ=255)                                                                                                   ccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc                                       <  3:193336/149‑1 (MQ=255)                                                                                                     gCTCCTACCAGGGGGCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc                                       >  7:368273/1‑147 (MQ=255)                                                                                                       tCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAg                                    >  1:204886/1‑148 (MQ=255)                                                                                                       tCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGGCAGCAAGGTCGCACCGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAg                                    >  3:40665/1‑148 (MQ=255)                                                                                                          tACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAaca                                >  5:32625/1‑149 (MQ=255)                                                                                                            ccAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg                                                                                                       >  3:390833/1‑76 (MQ=255)                                                                                                            ccAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg                                                                                                       <  4:390833/76‑1 (MQ=255)                                                                                                            ccAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCCGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACAcc                              >  8:323489/1‑149 (MQ=255)                                                                                                            ccAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAaca                                <  5:247394/147‑1 (MQ=255)                                                                                                             cAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGGCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCt                             >  7:318717/1‑149 (MQ=255)                                                                                                               ggggCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGaa                                  >  4:258894/1‑142 (MQ=255)                                                                                                               ggggCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGaa                                  <  3:258894/142‑1 (MQ=255)                                                                                                                gggCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTcgc                          <  7:7716/149‑1 (MQ=255)                                                                                                                gggCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTcgc                          <  2:204886/149‑1 (MQ=255)                                                                                                                          ggCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCgg                >  7:178087/1‑149 (MQ=255)                                                                                                                            ccTTCAGGCTTGTTTGTGCGGATCGCTGATCTTGTCCCAGTCCACGTACATCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCTACACTATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGTGa              <  8:215523/149‑1 (MQ=255)                                                                                                                            ccTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCGGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGa              >  7:335392/1‑149 (MQ=255)                                                                                                                                  ggcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGc        <  8:178087‑M2/141‑1 (MQ=255)                                                                                                                                   gcgtgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGCTCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCGCGCGGGCACTCGGGATCATGcc       >  8:377491‑M2/8‑149 (MQ=255)                                                                                                                                      tgttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAg    >  2:20032‑M2/5‑149 (MQ=255)                                                                                                                                        ttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGc  >  7:54729‑M2/3‑149 (MQ=255)                                                                                                                                        ttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGc  <  5:118735‑M2/147‑1 (MQ=255)                                                                                                                                        ttTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATACCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGc  >  5:234134‑M2/3‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                   AGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGC  >  NC_002947/5897708‑5897991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.