| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,918 | C→G | 5.1% | intergenic (‑329/‑89) | flhA ← / → PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,918 | 0 | C | G | 5.1% | 257.4 / 3.7 | 78 | intergenic (‑329/‑89) | flhA/PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (38/36); new base G (2/2); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.21e-01 | |||||||||||
CTCTACGGCAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACCGCGATG > NC_002947/4936771‑4937066 | ctctACGGCAATGGCATAAGGCTTAAGCTCTTGTAAAGCCACTCTGTGGGTGGCGCAACGACTAAATAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAAca < 7:157078/149‑1 (MQ=255) aCGGCAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAAcatcat > 7:96082/1‑149 (MQ=255) cGGCAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAAcatcat < 8:96082/148‑1 (MQ=255) cGGCAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAAcatca < 4:220850/147‑1 (MQ=255) cAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGCCTACTCAAAGGCCTGAACATCATGca > 8:400392/1‑147 (MQ=255) cAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGcc > 5:148849/1‑148 (MQ=255) aTGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGATGTTCATGccttt < 3:364243/149‑4 (MQ=255) gCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGc < 4:347726/149‑1 (MQ=255) cAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTc < 8:53055/149‑1 (MQ=255) aaaGGCTTAAGCTCTTGGAAAGCCACAGAGATGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTc > 7:218995/1‑148 (MQ=255) aaaGGCTTAAGCTCTTGGAAAGCCACAGAGATGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTc > 7:212901/1‑148 (MQ=255) aaaGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTc < 6:209412/148‑1 (MQ=255) aaaGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTc > 5:209412/1‑148 (MQ=255) aGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGAt < 8:61987/149‑1 (MQ=255) gCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATgg > 7:401853/1‑149 (MQ=255) cTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATGCCGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATgg < 1:125505/149‑1 (MQ=255) ttAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATgg > 7:251851/1‑147 (MQ=255) gCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGctc > 4:244142/1‑149 (MQ=255) gCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAActc < 4:254341/149‑1 (MQ=255) ctTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAg > 7:102736/1‑149 (MQ=255) ttGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGt > 7:346657/1‑149 (MQ=255) aaGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCTACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTc < 7:187872/149‑1 (MQ=255) gCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtg < 8:401853/149‑1 (MQ=255) ccACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtgt < 8:5199/149‑1 (MQ=255) cacaGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtgtg < 8:102736/149‑1 (MQ=255) cacaGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTAACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtgt > 1:304834/1‑148 (MQ=255) gagagGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATAc < 2:242296/149‑1 (MQ=255) gggTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTc < 2:6246/149‑1 (MQ=255) gTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGc < 3:244142/149‑1 (MQ=255) gcCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAgcg > 1:267229/1‑149 (MQ=255) cACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTa < 1:310875/115‑1 (MQ=255) cACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTa > 2:310875/1‑115 (MQ=255) cACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCt < 6:148849/149‑1 (MQ=255) aCGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCtt < 1:106278/149‑1 (MQ=255) cGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGt > 4:38202/1‑121 (MQ=255) cGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGt < 3:38202/121‑1 (MQ=255) cGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCttt < 4:363122/149‑1 (MQ=255) gACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCtttt > 5:238575/1‑149 (MQ=255) cAAAAAAAATCTGAGCGAAGTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGCGAGCCAATGACTACTCAAAGGCATTAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCtttt < 7:400392/147‑1 (MQ=255) aaaaaaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTa > 1:181421/1‑149 (MQ=255) aaaaaaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTa < 6:120539/149‑1 (MQ=255) aaaaaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTa > 6:111707/1‑148 (MQ=255) aaaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACAt > 4:281202/1‑149 (MQ=255) aaaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACAt < 8:346657/149‑1 (MQ=255) aaTCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATc < 1:38659/149‑1 (MQ=255) agAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTa > 6:36044/2‑149 (MQ=255) aGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTa < 5:111707/147‑1 (MQ=255) ggcTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGAccc > 2:114614/3‑149 (MQ=255) cTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCgg < 5:199470/149‑1 (MQ=255) ttGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCg > 5:404100/1‑147 (MQ=255) gATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGga < 8:149185/147‑1 (MQ=255) gATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGga < 8:251851/147‑1 (MQ=255) gCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACAtgg > 7:29984/1‑149 (MQ=255) gCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACAtgg > 3:369797/1‑149 (MQ=255) aaaaGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACAtggtg < 5:263264/149‑1 (MQ=255) tCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAAc > 5:202427/1‑149 (MQ=255) gTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAActctct < 8:29936/149‑1 (MQ=255) cTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGa < 2:181421/148‑1 (MQ=255) tATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGa > 5:115365/1‑147 (MQ=255) cGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGTTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCtt < 4:313141/149‑1 (MQ=255) tGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATc < 2:304834/149‑1 (MQ=255) agagCCAATGACTACTCAAAGGCATGAACATCATGACAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTcc > 7:295384/1‑149 (MQ=255) cAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGAc > 5:41103/1‑148 (MQ=255) cAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGAc > 2:370824/1‑148 (MQ=255) aaTGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACa > 5:294530/1‑148 (MQ=255) ctCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCg < 3:281202/147‑1 (MQ=255) tCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtgt < 4:339690/53‑1 (MQ=255) tCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCtgt > 3:339690/1‑53 (MQ=255) aaaGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCAt > 7:50126/1‑148 (MQ=255) aaaGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCAt > 4:369314/1‑148 (MQ=255) aaaGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATCGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCAt > 5:3328/1‑148 (MQ=255) aaaGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATAGCTAGACAAGGAGAACATGGTGGCGAACTCTCTCTATAGCTTTATAGTTCCAGACAAACATCGCAAt > 5:27153/1‑148 (MQ=255) ttggCATGATGTTCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATa > 4:11865/3‑148 (MQ=255) tggCATGATGTTCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGaa < 1:64153/105‑1 (MQ=255) tggCATGATGTTCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGaa > 2:64153/2‑106 (MQ=255) aGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATaaa < 6:202427/149‑1 (MQ=255) gCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAAc > 5:188707/1‑149 (MQ=255) gCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAAc > 2:301731/1‑149 (MQ=255) tGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACcgc < 6:404100/149‑1 (MQ=255) gAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACcgc > 1:25248/1‑148 (MQ=255) gAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCACTAGACCCGGAGAACATGTTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCTCCATAAAACcgc > 4:92550/1‑148 (MQ=255) catcatcatGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGACAACATGCTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACcgcg < 2:106731/146‑1 (MQ=255) aaCATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACcgcg < 6:238575/148‑1 (MQ=255) catcatGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACCGCGATg > 4:198933/1‑149 (MQ=255) | CTCTACGGCAATGGCCAAAGGCTTAAGCTCTTGGAAAGCCACAGAGAGGGTGGCGCCACGACAAAAAAAATCTGAGCGACTTGATCATGCAAAAGCTCACGGTTTCTATG‑CGGATGTAGAGAGCCAATGACTACTCAAAGGCATGAACATCATGCCAACTGCTCGATGGTAGCTCTAGTGAGTCTGTGATACCTTCGCCAGCGCTTTTGACTACATCGCTAGACCCGGAGAACATGGTGGCGAACTCTCTCGATAGCTTTATCGTTCCTGACAAACATCGCCATAAAACCGCGATG > NC_002947/4936771‑4937066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |